miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30555 3' -51.5 NC_006548.1 + 36622 0.66 0.83048
Target:  5'- aUGCGUcGAuacgGUGCcAGCgccgcaugaGGCCGGCGCg -3'
miRNA:   3'- -ACGCA-CU----CAUGcUCGaa-------UCGGUUGCG- -5'
30555 3' -51.5 NC_006548.1 + 26862 0.66 0.829526
Target:  5'- cGCGUGAGccGgGAGCUuuucgacUGGCCGAa-- -3'
miRNA:   3'- aCGCACUCa-UgCUCGA-------AUCGGUUgcg -5'
30555 3' -51.5 NC_006548.1 + 1257 0.66 0.820842
Target:  5'- cGCGcGcGGUGCGgcaGGCUUGGCUuugAGCGUc -3'
miRNA:   3'- aCGCaC-UCAUGC---UCGAAUCGG---UUGCG- -5'
30555 3' -51.5 NC_006548.1 + 10246 0.66 0.819866
Target:  5'- cGCGaUGAGUGCcgccaaaagaaagGAGCUuuUGGCUu-CGCu -3'
miRNA:   3'- aCGC-ACUCAUG-------------CUCGA--AUCGGuuGCG- -5'
30555 3' -51.5 NC_006548.1 + 36820 0.66 0.800912
Target:  5'- gGCGcGAGgcucucUGCGAGCgucgccgAGCUggUGCg -3'
miRNA:   3'- aCGCaCUC------AUGCUCGaa-----UCGGuuGCG- -5'
30555 3' -51.5 NC_006548.1 + 28271 0.66 0.780191
Target:  5'- aUGCGgccaaagGGGcUGCGGGCgucGUCAACGUc -3'
miRNA:   3'- -ACGCa------CUC-AUGCUCGaauCGGUUGCG- -5'
30555 3' -51.5 NC_006548.1 + 34940 0.67 0.769566
Target:  5'- gUGCuUGAGgcuaccggugACGAGC-UGGCCcuGCGCc -3'
miRNA:   3'- -ACGcACUCa---------UGCUCGaAUCGGu-UGCG- -5'
30555 3' -51.5 NC_006548.1 + 9003 0.67 0.769566
Target:  5'- cGCG-GGGU-CGAGCgccUGGCCAuCGa -3'
miRNA:   3'- aCGCaCUCAuGCUCGa--AUCGGUuGCg -5'
30555 3' -51.5 NC_006548.1 + 18211 0.67 0.758783
Target:  5'- cGCG-GAGgACGAGC-UGGCau-CGCu -3'
miRNA:   3'- aCGCaCUCaUGCUCGaAUCGguuGCG- -5'
30555 3' -51.5 NC_006548.1 + 29875 0.67 0.736796
Target:  5'- aGCGUG-GUugG-GCUgcgcugcaugacUGGuCCGGCGCu -3'
miRNA:   3'- aCGCACuCAugCuCGA------------AUC-GGUUGCG- -5'
30555 3' -51.5 NC_006548.1 + 27868 0.67 0.736796
Target:  5'- cGgGUGAGgugcaGCGcAGUggUGGCCGAgGCg -3'
miRNA:   3'- aCgCACUCa----UGC-UCGa-AUCGGUUgCG- -5'
30555 3' -51.5 NC_006548.1 + 31224 0.68 0.691515
Target:  5'- cUGCGUGGacGCGcAGCUUGGCgAGCa- -3'
miRNA:   3'- -ACGCACUcaUGC-UCGAAUCGgUUGcg -5'
30555 3' -51.5 NC_006548.1 + 34174 0.68 0.668436
Target:  5'- gUGCGUGguucGGUAcCGAGC--AGCCGGCa- -3'
miRNA:   3'- -ACGCAC----UCAU-GCUCGaaUCGGUUGcg -5'
30555 3' -51.5 NC_006548.1 + 6501 0.68 0.668436
Target:  5'- gGCGcGGGuUACGGGCUcGGUCGaaaACGCc -3'
miRNA:   3'- aCGCaCUC-AUGCUCGAaUCGGU---UGCG- -5'
30555 3' -51.5 NC_006548.1 + 33055 0.7 0.598675
Target:  5'- gUGCGaaugGGGUACaagcggGAGCcggccGGCCAGCGCc -3'
miRNA:   3'- -ACGCa---CUCAUG------CUCGaa---UCGGUUGCG- -5'
30555 3' -51.5 NC_006548.1 + 35857 0.7 0.587095
Target:  5'- gGCGUGcccGUGCGaAGaau-GCCGGCGCg -3'
miRNA:   3'- aCGCACu--CAUGC-UCgaauCGGUUGCG- -5'
30555 3' -51.5 NC_006548.1 + 4801 0.7 0.575557
Target:  5'- cUGCGUGAGUugGAggacgGCUucaccaagcUGGUCAGCa- -3'
miRNA:   3'- -ACGCACUCAugCU-----CGA---------AUCGGUUGcg -5'
30555 3' -51.5 NC_006548.1 + 19887 0.72 0.475095
Target:  5'- gGCGUGAGUGCagGGGCUUuucGGCgGAC-Cg -3'
miRNA:   3'- aCGCACUCAUG--CUCGAA---UCGgUUGcG- -5'
30555 3' -51.5 NC_006548.1 + 36699 0.72 0.475095
Target:  5'- cGCGUGAGUACGugaccGGCgagacAGUgAACGUg -3'
miRNA:   3'- aCGCACUCAUGC-----UCGaa---UCGgUUGCG- -5'
30555 3' -51.5 NC_006548.1 + 28726 1 0.006322
Target:  5'- uUGCGUGAGUACGAGCUUGaCCAACGCa -3'
miRNA:   3'- -ACGCACUCAUGCUCGAAUcGGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.