miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30556 3' -50.4 NC_006548.1 + 11832 0.66 0.858375
Target:  5'- uUGuAGGCAAC--GACCUGGAgCUGCUc -3'
miRNA:   3'- gAC-UUCGUUGagUUGGACCU-GAUGGa -5'
30556 3' -50.4 NC_006548.1 + 6227 0.66 0.858375
Target:  5'- ---cGGCAcaACUCGACCgUGGGC-GCCUu -3'
miRNA:   3'- gacuUCGU--UGAGUUGG-ACCUGaUGGA- -5'
30556 3' -50.4 NC_006548.1 + 37030 0.66 0.849355
Target:  5'- uUGAccGGCA---CGACCUGGAcCUACCc -3'
miRNA:   3'- gACU--UCGUugaGUUGGACCU-GAUGGa -5'
30556 3' -50.4 NC_006548.1 + 32757 0.66 0.849355
Target:  5'- gCUGggGCgGGCg-GAUCUGGgcGCUGCCg -3'
miRNA:   3'- -GACuuCG-UUGagUUGGACC--UGAUGGa -5'
30556 3' -50.4 NC_006548.1 + 27972 0.66 0.849355
Target:  5'- --aAAGCAGCUCAGCgaguggCUGGAaaaggGCCUg -3'
miRNA:   3'- gacUUCGUUGAGUUG------GACCUga---UGGA- -5'
30556 3' -50.4 NC_006548.1 + 24598 0.66 0.849355
Target:  5'- uCUGAaagccGGCGACUUcgugAAgCUGGACgGCCa -3'
miRNA:   3'- -GACU-----UCGUUGAG----UUgGACCUGaUGGa -5'
30556 3' -50.4 NC_006548.1 + 23111 0.66 0.840072
Target:  5'- -cGGcAGCAACUgagCAGCCUGGguGCUAUCc -3'
miRNA:   3'- gaCU-UCGUUGA---GUUGGACC--UGAUGGa -5'
30556 3' -50.4 NC_006548.1 + 14028 0.67 0.820763
Target:  5'- gCUGGAGauccGCcgCGAgCUGGACUACUUg -3'
miRNA:   3'- -GACUUCgu--UGa-GUUgGACCUGAUGGA- -5'
30556 3' -50.4 NC_006548.1 + 37158 0.67 0.81076
Target:  5'- -cGAA-CGACaCGGCCUGGGCUuccACCUg -3'
miRNA:   3'- gaCUUcGUUGaGUUGGACCUGA---UGGA- -5'
30556 3' -50.4 NC_006548.1 + 27685 0.67 0.81076
Target:  5'- -cGAA-CGGCUUGGCCUGGAgCUGCUc -3'
miRNA:   3'- gaCUUcGUUGAGUUGGACCU-GAUGGa -5'
30556 3' -50.4 NC_006548.1 + 17631 0.67 0.81076
Target:  5'- -gGAGGCAGCUC-ACCUGGcCggACg- -3'
miRNA:   3'- gaCUUCGUUGAGuUGGACCuGa-UGga -5'
30556 3' -50.4 NC_006548.1 + 38135 0.67 0.800542
Target:  5'- gUGggGUucCUCAACCaGuGCUGCCUu -3'
miRNA:   3'- gACuuCGuuGAGUUGGaCcUGAUGGA- -5'
30556 3' -50.4 NC_006548.1 + 22821 0.67 0.800542
Target:  5'- --aAGGCGACUCcGCCgcuucgGGACUgGCCa -3'
miRNA:   3'- gacUUCGUUGAGuUGGa-----CCUGA-UGGa -5'
30556 3' -50.4 NC_006548.1 + 25718 0.67 0.79012
Target:  5'- gCUGGagcGGCAACUCcaguACCUGG--UGCCg -3'
miRNA:   3'- -GACU---UCGUUGAGu---UGGACCugAUGGa -5'
30556 3' -50.4 NC_006548.1 + 26420 0.68 0.767635
Target:  5'- aCUGucGGCGGCUC-ACCUGcGGCUgagcaauACCUa -3'
miRNA:   3'- -GACu-UCGUUGAGuUGGAC-CUGA-------UGGA- -5'
30556 3' -50.4 NC_006548.1 + 8320 0.68 0.765455
Target:  5'- uCUGcauGCGGCUgAcgugauccgcauggGCCUGGGCUAUCUg -3'
miRNA:   3'- -GACuu-CGUUGAgU--------------UGGACCUGAUGGA- -5'
30556 3' -50.4 NC_006548.1 + 16495 0.68 0.735448
Target:  5'- cCUGGAGCAGCagcugCAGCgCgUGGGCUgggACCg -3'
miRNA:   3'- -GACUUCGUUGa----GUUG-G-ACCUGA---UGGa -5'
30556 3' -50.4 NC_006548.1 + 2638 0.69 0.664873
Target:  5'- cCUGGAuacGCAcguacgccuugguGCUCAcgACCUGGACaGCCUc -3'
miRNA:   3'- -GACUU---CGU-------------UGAGU--UGGACCUGaUGGA- -5'
30556 3' -50.4 NC_006548.1 + 28770 0.7 0.654276
Target:  5'- -gGAAGCccguGCUCGcgccGCCUGGGCgACCc -3'
miRNA:   3'- gaCUUCGu---UGAGU----UGGACCUGaUGGa -5'
30556 3' -50.4 NC_006548.1 + 637 0.7 0.642479
Target:  5'- -aGAacaGGCGGC-CGGCCUGGaacaGCUGCCg -3'
miRNA:   3'- gaCU---UCGUUGaGUUGGACC----UGAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.