miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30556 5' -61.2 NC_006548.1 + 9548 0.66 0.379137
Target:  5'- aCCGAACCGUUGcaucaccAGGCG-CCGaaCGCCu -3'
miRNA:   3'- -GGUUUGGCAGC-------UCCGCcGGCc-GCGGc -5'
30556 5' -61.2 NC_006548.1 + 5549 0.66 0.368056
Target:  5'- cCCAGGCCGaccuggcUCGA-GCGGUcgaccugagcccggCGGCGUCGc -3'
miRNA:   3'- -GGUUUGGC-------AGCUcCGCCG--------------GCCGCGGC- -5'
30556 5' -61.2 NC_006548.1 + 27598 0.66 0.34657
Target:  5'- gCCAGGCCGUaaccGGCGauGCCGGCGa-- -3'
miRNA:   3'- -GGUUUGGCAgcu-CCGC--CGGCCGCggc -5'
30556 5' -61.2 NC_006548.1 + 14242 0.66 0.34657
Target:  5'- uCCGGGCCuacaUCGAGGgGcGCCuGGCcgaugGCCGg -3'
miRNA:   3'- -GGUUUGGc---AGCUCCgC-CGG-CCG-----CGGC- -5'
30556 5' -61.2 NC_006548.1 + 34036 0.66 0.338549
Target:  5'- -gGAGCCuUCGA--CGGCCGaGCGCCa -3'
miRNA:   3'- ggUUUGGcAGCUccGCCGGC-CGCGGc -5'
30556 5' -61.2 NC_006548.1 + 37298 0.66 0.338549
Target:  5'- gCAGGCCGUUGAucaauaGGCCGGUGUUa -3'
miRNA:   3'- gGUUUGGCAGCUccg---CCGGCCGCGGc -5'
30556 5' -61.2 NC_006548.1 + 33133 0.66 0.330664
Target:  5'- aCAuACCG---GGGCuGGCCGGUGCuCGg -3'
miRNA:   3'- gGUuUGGCagcUCCG-CCGGCCGCG-GC- -5'
30556 5' -61.2 NC_006548.1 + 17464 0.66 0.330664
Target:  5'- gCGAACUcgGUgGaAGGC-GUCGGCGCCGu -3'
miRNA:   3'- gGUUUGG--CAgC-UCCGcCGGCCGCGGC- -5'
30556 5' -61.2 NC_006548.1 + 26327 0.67 0.322914
Target:  5'- gCAGAgCG-CGuucGGCGGCCGG-GUCGa -3'
miRNA:   3'- gGUUUgGCaGCu--CCGCCGGCCgCGGC- -5'
30556 5' -61.2 NC_006548.1 + 35316 0.67 0.322914
Target:  5'- aCCAucgccGCCaGUCGAGGauucaccgguUGGUCcggGGCGCCGa -3'
miRNA:   3'- -GGUu----UGG-CAGCUCC----------GCCGG---CCGCGGC- -5'
30556 5' -61.2 NC_006548.1 + 36620 0.67 0.31833
Target:  5'- -gGAugCGUCGAuacGGUgccagcgccgcaugaGGCCGGCGCg- -3'
miRNA:   3'- ggUUugGCAGCU---CCG---------------CCGGCCGCGgc -5'
30556 5' -61.2 NC_006548.1 + 32810 0.67 0.315301
Target:  5'- gCAAG-CGUCaccGCGGCCGGCGCa- -3'
miRNA:   3'- gGUUUgGCAGcucCGCCGGCCGCGgc -5'
30556 5' -61.2 NC_006548.1 + 16351 0.67 0.314547
Target:  5'- gCAGGCCagagauaaaggGUCGAGugaugucGCGGCCGuCGCCa -3'
miRNA:   3'- gGUUUGG-----------CAGCUC-------CGCCGGCcGCGGc -5'
30556 5' -61.2 NC_006548.1 + 12596 0.67 0.307824
Target:  5'- aUCGAACC----AGGCcagcuGGUCGGCGCCGg -3'
miRNA:   3'- -GGUUUGGcagcUCCG-----CCGGCCGCGGC- -5'
30556 5' -61.2 NC_006548.1 + 17384 0.67 0.307824
Target:  5'- cCCAGGCC---GAGGCca-CGGCGCCGa -3'
miRNA:   3'- -GGUUUGGcagCUCCGccgGCCGCGGC- -5'
30556 5' -61.2 NC_006548.1 + 33743 0.67 0.307824
Target:  5'- uUCAguGAUCG-CGAG-CGGUCGGuCGCCGa -3'
miRNA:   3'- -GGU--UUGGCaGCUCcGCCGGCC-GCGGC- -5'
30556 5' -61.2 NC_006548.1 + 1713 0.67 0.307824
Target:  5'- gUAGGCCGUCGAgaauGGCGGCaGGU-CCa -3'
miRNA:   3'- gGUUUGGCAGCU----CCGCCGgCCGcGGc -5'
30556 5' -61.2 NC_006548.1 + 16632 0.67 0.304872
Target:  5'- uCCGcAACCGUCggcgcuuccgcuauGAccaggacGGCGGCCuGCGCCu -3'
miRNA:   3'- -GGU-UUGGCAG--------------CU-------CCGCCGGcCGCGGc -5'
30556 5' -61.2 NC_006548.1 + 35876 0.67 0.29328
Target:  5'- ---uGCCGgcgCGAuccGcGCGGCCGGCGgCGu -3'
miRNA:   3'- gguuUGGCa--GCU---C-CGCCGGCCGCgGC- -5'
30556 5' -61.2 NC_006548.1 + 18511 0.67 0.29328
Target:  5'- cCCGGuCCGUCGuGGCcGCCGGguccaUGUCGg -3'
miRNA:   3'- -GGUUuGGCAGCuCCGcCGGCC-----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.