Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30557 | 3' | -54.3 | NC_006548.1 | + | 29355 | 0.66 | 0.590427 |
Target: 5'- cGCGGUcucgccgauGGCAcccugucGCUGCaggAGGCCgcgGUAUCg -3' miRNA: 3'- -CGCCG---------UCGU-------UGACGa--UCUGGa--CGUAG- -5' |
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30557 | 3' | -54.3 | NC_006548.1 | + | 30500 | 0.73 | 0.257443 |
Target: 5'- cGCGGguGCAACUGCUGGcauggaACCaGCc-- -3' miRNA: 3'- -CGCCguCGUUGACGAUC------UGGaCGuag -5' |
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30557 | 3' | -54.3 | NC_006548.1 | + | 31432 | 0.66 | 0.637804 |
Target: 5'- aCGGCGGCcuauCUGC---ACCUGCAcgUCg -3' miRNA: 3'- cGCCGUCGuu--GACGaucUGGACGU--AG- -5' |
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30557 | 3' | -54.3 | NC_006548.1 | + | 32466 | 0.68 | 0.470301 |
Target: 5'- aCGGCGGCGACgGCUGccGGCCaggcugaugccaucgGCGUCc -3' miRNA: 3'- cGCCGUCGUUGaCGAU--CUGGa--------------CGUAG- -5' |
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30557 | 3' | -54.3 | NC_006548.1 | + | 33315 | 0.68 | 0.469242 |
Target: 5'- uGCGGCGcugcGCAGcCUGCUGuacGcCCUGCGUg -3' miRNA: 3'- -CGCCGU----CGUU-GACGAU---CuGGACGUAg -5' |
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30557 | 3' | -54.3 | NC_006548.1 | + | 35265 | 0.68 | 0.469242 |
Target: 5'- cUGGCGGCGAUggugggcgGcCUGGuACCUGCGUUc -3' miRNA: 3'- cGCCGUCGUUGa-------C-GAUC-UGGACGUAG- -5' |
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30557 | 3' | -54.3 | NC_006548.1 | + | 35514 | 0.78 | 0.109349 |
Target: 5'- cGUGGCAaggaucGCGGcCUGCUGGACCagGCGUCa -3' miRNA: 3'- -CGCCGU------CGUU-GACGAUCUGGa-CGUAG- -5' |
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30557 | 3' | -54.3 | NC_006548.1 | + | 36367 | 0.83 | 0.046847 |
Target: 5'- cUGGCuGCAGCUGCgccAGAUCUGCAUCg -3' miRNA: 3'- cGCCGuCGUUGACGa--UCUGGACGUAG- -5' |
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30557 | 3' | -54.3 | NC_006548.1 | + | 37841 | 0.69 | 0.438074 |
Target: 5'- gGUGGCuGCuccgAACgugGCUGGugCUGCAaaUCa -3' miRNA: 3'- -CGCCGuCG----UUGa--CGAUCugGACGU--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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