Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30557 | 5' | -53.1 | NC_006548.1 | + | 16656 | 0.66 | 0.747227 |
Target: 5'- aUGACCAGGac-GGCGGCcUGcGCCUg -3' miRNA: 3'- gGCUGGUCCaucUCGUUGaACaCGGA- -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 17689 | 0.67 | 0.691607 |
Target: 5'- uCCGGCCAGGU-GAGC------UGCCUc -3' miRNA: 3'- -GGCUGGUCCAuCUCGuugaacACGGA- -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 14374 | 0.67 | 0.688204 |
Target: 5'- aCGGCCAGaagcUGGAGCGGCggcuggcggcaauucGUGCCa -3' miRNA: 3'- gGCUGGUCc---AUCUCGUUGaa-------------CACGGa -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 37414 | 0.67 | 0.680244 |
Target: 5'- aCCG-CCuagcucgcuGGUGG-GCAACggGUGCCa -3' miRNA: 3'- -GGCuGGu--------CCAUCuCGUUGaaCACGGa -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 33247 | 0.67 | 0.668832 |
Target: 5'- gCCGACCAGGcgGGGGuUGGCUUcccgGUGCa- -3' miRNA: 3'- -GGCUGGUCCa-UCUC-GUUGAA----CACGga -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 20902 | 0.67 | 0.645905 |
Target: 5'- gCGGCCgAGGUGcuGcGCAGCUUGcugGCCg -3' miRNA: 3'- gGCUGG-UCCAU--CuCGUUGAACa--CGGa -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 16141 | 0.68 | 0.599978 |
Target: 5'- gUCGACCAGGccGGaAGCAGCaUGgaucGCCa -3' miRNA: 3'- -GGCUGGUCCa-UC-UCGUUGaACa---CGGa -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 7437 | 0.68 | 0.588544 |
Target: 5'- cCCGACUGGGUGGGGgcCGAUaUG-GCCg -3' miRNA: 3'- -GGCUGGUCCAUCUC--GUUGaACaCGGa -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 19970 | 0.68 | 0.577151 |
Target: 5'- gCGACCAucgAGAGCGAC--GUGCCg -3' miRNA: 3'- gGCUGGUccaUCUCGUUGaaCACGGa -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 7568 | 0.7 | 0.488494 |
Target: 5'- gCCGAgCAGGccgaGGAGCAAg--GUGCCg -3' miRNA: 3'- -GGCUgGUCCa---UCUCGUUgaaCACGGa -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 9905 | 0.75 | 0.237337 |
Target: 5'- gCCGACCAGGUGaAGCAacGCUUccGCCa -3' miRNA: 3'- -GGCUGGUCCAUcUCGU--UGAAcaCGGa -5' |
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30557 | 5' | -53.1 | NC_006548.1 | + | 29175 | 1.09 | 0.000978 |
Target: 5'- gCCGACCAGGUAGAGCAACUUGUGCCUc -3' miRNA: 3'- -GGCUGGUCCAUCUCGUUGAACACGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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