miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30557 5' -53.1 NC_006548.1 + 16656 0.66 0.747227
Target:  5'- aUGACCAGGac-GGCGGCcUGcGCCUg -3'
miRNA:   3'- gGCUGGUCCaucUCGUUGaACaCGGA- -5'
30557 5' -53.1 NC_006548.1 + 17689 0.67 0.691607
Target:  5'- uCCGGCCAGGU-GAGC------UGCCUc -3'
miRNA:   3'- -GGCUGGUCCAuCUCGuugaacACGGA- -5'
30557 5' -53.1 NC_006548.1 + 14374 0.67 0.688204
Target:  5'- aCGGCCAGaagcUGGAGCGGCggcuggcggcaauucGUGCCa -3'
miRNA:   3'- gGCUGGUCc---AUCUCGUUGaa-------------CACGGa -5'
30557 5' -53.1 NC_006548.1 + 37414 0.67 0.680244
Target:  5'- aCCG-CCuagcucgcuGGUGG-GCAACggGUGCCa -3'
miRNA:   3'- -GGCuGGu--------CCAUCuCGUUGaaCACGGa -5'
30557 5' -53.1 NC_006548.1 + 33247 0.67 0.668832
Target:  5'- gCCGACCAGGcgGGGGuUGGCUUcccgGUGCa- -3'
miRNA:   3'- -GGCUGGUCCa-UCUC-GUUGAA----CACGga -5'
30557 5' -53.1 NC_006548.1 + 20902 0.67 0.645905
Target:  5'- gCGGCCgAGGUGcuGcGCAGCUUGcugGCCg -3'
miRNA:   3'- gGCUGG-UCCAU--CuCGUUGAACa--CGGa -5'
30557 5' -53.1 NC_006548.1 + 16141 0.68 0.599978
Target:  5'- gUCGACCAGGccGGaAGCAGCaUGgaucGCCa -3'
miRNA:   3'- -GGCUGGUCCa-UC-UCGUUGaACa---CGGa -5'
30557 5' -53.1 NC_006548.1 + 7437 0.68 0.588544
Target:  5'- cCCGACUGGGUGGGGgcCGAUaUG-GCCg -3'
miRNA:   3'- -GGCUGGUCCAUCUC--GUUGaACaCGGa -5'
30557 5' -53.1 NC_006548.1 + 19970 0.68 0.577151
Target:  5'- gCGACCAucgAGAGCGAC--GUGCCg -3'
miRNA:   3'- gGCUGGUccaUCUCGUUGaaCACGGa -5'
30557 5' -53.1 NC_006548.1 + 7568 0.7 0.488494
Target:  5'- gCCGAgCAGGccgaGGAGCAAg--GUGCCg -3'
miRNA:   3'- -GGCUgGUCCa---UCUCGUUgaaCACGGa -5'
30557 5' -53.1 NC_006548.1 + 9905 0.75 0.237337
Target:  5'- gCCGACCAGGUGaAGCAacGCUUccGCCa -3'
miRNA:   3'- -GGCUGGUCCAUcUCGU--UGAAcaCGGa -5'
30557 5' -53.1 NC_006548.1 + 29175 1.09 0.000978
Target:  5'- gCCGACCAGGUAGAGCAACUUGUGCCUc -3'
miRNA:   3'- -GGCUGGUCCAUCUCGUUGAACACGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.