miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 3' -58.9 NC_006548.1 + 20348 0.66 0.474479
Target:  5'- aGAUCCuGcGCCGCcugcgugacuucuucGUCGAGCGCGa-- -3'
miRNA:   3'- gCUAGG-C-CGGCGc--------------UAGCUCGCGCacu -5'
30558 3' -58.9 NC_006548.1 + 18868 0.66 0.473478
Target:  5'- cCGAUCUGGaUCGCugaucGAUUGGGCGgaCGUGGc -3'
miRNA:   3'- -GCUAGGCC-GGCG-----CUAGCUCGC--GCACU- -5'
30558 3' -58.9 NC_006548.1 + 37410 0.66 0.463524
Target:  5'- uCGGcCUGGCCGCuaGUCG-GCaGCGUGGc -3'
miRNA:   3'- -GCUaGGCCGGCGc-UAGCuCG-CGCACU- -5'
30558 3' -58.9 NC_006548.1 + 28209 0.66 0.434342
Target:  5'- aGAUCCGGCgGUuGUgGAGgGCcUGAa -3'
miRNA:   3'- gCUAGGCCGgCGcUAgCUCgCGcACU- -5'
30558 3' -58.9 NC_006548.1 + 35368 0.67 0.397148
Target:  5'- uGAgCCGGUgGCGA-CGAGCGCu--- -3'
miRNA:   3'- gCUaGGCCGgCGCUaGCUCGCGcacu -5'
30558 3' -58.9 NC_006548.1 + 4574 0.67 0.379334
Target:  5'- -cAUCCaGgCGCuGAUCGAGCGCcUGAg -3'
miRNA:   3'- gcUAGGcCgGCG-CUAGCUCGCGcACU- -5'
30558 3' -58.9 NC_006548.1 + 35852 0.68 0.362064
Target:  5'- uGGUUC-GCCGUGccGUCGAGCGaUGUGAu -3'
miRNA:   3'- gCUAGGcCGGCGC--UAGCUCGC-GCACU- -5'
30558 3' -58.9 NC_006548.1 + 21900 0.69 0.29858
Target:  5'- aGGUCCGGgccUCGCGAUCGAGCa----- -3'
miRNA:   3'- gCUAGGCC---GGCGCUAGCUCGcgcacu -5'
30558 3' -58.9 NC_006548.1 + 33293 0.7 0.270218
Target:  5'- aGAccUCCGGCCGCGAg-GAGCauGCGg-- -3'
miRNA:   3'- gCU--AGGCCGGCGCUagCUCG--CGCacu -5'
30558 3' -58.9 NC_006548.1 + 36643 0.71 0.208817
Target:  5'- gCGGUgCCGGCCGCGGcgUUGAuCGCGUcGAc -3'
miRNA:   3'- -GCUA-GGCCGGCGCU--AGCUcGCGCA-CU- -5'
30558 3' -58.9 NC_006548.1 + 29230 1.09 0.000346
Target:  5'- gCGAUCCGGCCGCGAUCGAGCGCGUGAa -3'
miRNA:   3'- -GCUAGGCCGGCGCUAGCUCGCGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.