miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 5' -57.2 NC_006548.1 + 24602 0.66 0.455201
Target:  5'- gGCgGGCAGCUCGAUc-UGCgaGGCc -3'
miRNA:   3'- gCGgUCGUCGAGCUGuuAUGggCCGa -5'
30558 5' -57.2 NC_006548.1 + 34974 0.66 0.455201
Target:  5'- uGCCGGCAuuccCUCGGCAAcgaaCCGGUg -3'
miRNA:   3'- gCGGUCGUc---GAGCUGUUaug-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 22593 0.66 0.465364
Target:  5'- cCGCCGGCGGCU-----GUGCgCCGGUa -3'
miRNA:   3'- -GCGGUCGUCGAgcuguUAUG-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 18782 0.66 0.475643
Target:  5'- gGCCuGCGGCUgGGCGAggauCUgCGGCa -3'
miRNA:   3'- gCGGuCGUCGAgCUGUUau--GG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 1733 0.66 0.475643
Target:  5'- uCGCCAGCaAGCUCG-CAAUgagAUCCG-Cg -3'
miRNA:   3'- -GCGGUCG-UCGAGCuGUUA---UGGGCcGa -5'
30558 5' -57.2 NC_006548.1 + 22165 0.66 0.475643
Target:  5'- -uCCAGCAGCUCcuGCAGgaagGCCauCGGCa -3'
miRNA:   3'- gcGGUCGUCGAGc-UGUUa---UGG--GCCGa -5'
30558 5' -57.2 NC_006548.1 + 5536 0.66 0.475643
Target:  5'- gGCUcgAGCGG-UCGACcugaGCCCGGCg -3'
miRNA:   3'- gCGG--UCGUCgAGCUGuua-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 21430 0.66 0.486034
Target:  5'- gGCCGGCGGCagagucgCGGCAAccgcucGCCCcugGGCg -3'
miRNA:   3'- gCGGUCGUCGa------GCUGUUa-----UGGG---CCGa -5'
30558 5' -57.2 NC_006548.1 + 4211 0.66 0.486034
Target:  5'- aCGCCuguaucAGCGGUUCGAgGGUGuccuCCgCGGCa -3'
miRNA:   3'- -GCGG------UCGUCGAGCUgUUAU----GG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 4546 0.66 0.506066
Target:  5'- -aCCAGCGGCcgCGACAAgacgagccagcucUACCC-GCUg -3'
miRNA:   3'- gcGGUCGUCGa-GCUGUU-------------AUGGGcCGA- -5'
30558 5' -57.2 NC_006548.1 + 28610 0.66 0.50713
Target:  5'- uCGCgGGUAGCgccgCGACc-UGgCCGGCg -3'
miRNA:   3'- -GCGgUCGUCGa---GCUGuuAUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 17064 0.66 0.50713
Target:  5'- aGUCGGCGGUccCGGagc-GCCCGGCUu -3'
miRNA:   3'- gCGGUCGUCGa-GCUguuaUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 1048 0.71 0.253131
Target:  5'- uCGUCAGCAGCUCGGCcugcaggacGAUGucuaUCGGCa -3'
miRNA:   3'- -GCGGUCGUCGAGCUG---------UUAUg---GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 28959 0.71 0.246548
Target:  5'- gCGCCGGCcGcCUCGACGGUuuGgCCGGUg -3'
miRNA:   3'- -GCGGUCGuC-GAGCUGUUA--UgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 746 0.72 0.209983
Target:  5'- aGCCAGauCAGCUcaCGGCAAU-CCUGGCg -3'
miRNA:   3'- gCGGUC--GUCGA--GCUGUUAuGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 32900 0.73 0.183175
Target:  5'- cCGCCAGCGGguaucgcaCUCGACcguuuGUGCgCCGGCc -3'
miRNA:   3'- -GCGGUCGUC--------GAGCUGu----UAUG-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 32849 0.73 0.183175
Target:  5'- uGCCAGCAGCUgGAUG---UCCGGCc -3'
miRNA:   3'- gCGGUCGUCGAgCUGUuauGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 13343 0.68 0.369607
Target:  5'- cCGCCGGC-GCUCaaACAGcgACCUGGCc -3'
miRNA:   3'- -GCGGUCGuCGAGc-UGUUa-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 848 0.74 0.142484
Target:  5'- uGCCGGCGGCUCG-Cu-UGCUgGGCUg -3'
miRNA:   3'- gCGGUCGUCGAGCuGuuAUGGgCCGA- -5'
30558 5' -57.2 NC_006548.1 + 18222 0.68 0.360799
Target:  5'- aGCUGGCAucGCUgGGCAAggacgGCCCGGaCg -3'
miRNA:   3'- gCGGUCGU--CGAgCUGUUa----UGGGCC-Ga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.