miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3056 3' -51.8 NC_001493.1 + 61435 0.66 0.983397
Target:  5'- uUGCUUugGUuucuucgggguUACGgGCUcGGGGCUUa -3'
miRNA:   3'- cGCGAGugCA-----------AUGCgCGAaCCUUGAG- -5'
3056 3' -51.8 NC_001493.1 + 130513 0.66 0.983397
Target:  5'- aGCGCUCcCGcUAC-CGCUccUGGAcgaccucgucgaGCUCg -3'
miRNA:   3'- -CGCGAGuGCaAUGcGCGA--ACCU------------UGAG- -5'
3056 3' -51.8 NC_001493.1 + 17012 0.66 0.974038
Target:  5'- uGCGUUCACucgcgAgGCGUcugGGGACUCu -3'
miRNA:   3'- -CGCGAGUGcaa--UgCGCGaa-CCUUGAG- -5'
3056 3' -51.8 NC_001493.1 + 132566 0.66 0.974038
Target:  5'- uGCGUUCACucgcgAgGCGUcugGGGACUCu -3'
miRNA:   3'- -CGCGAGUGcaa--UgCGCGaa-CCUUGAG- -5'
3056 3' -51.8 NC_001493.1 + 40225 0.66 0.974038
Target:  5'- -aGCUCGCGaauCGUGCgcaGGAcccGCUCg -3'
miRNA:   3'- cgCGAGUGCaauGCGCGaa-CCU---UGAG- -5'
3056 3' -51.8 NC_001493.1 + 66230 0.67 0.961335
Target:  5'- gGCGCaCGCGagcUUugGCGggUGGAAgCUCu -3'
miRNA:   3'- -CGCGaGUGC---AAugCGCgaACCUU-GAG- -5'
3056 3' -51.8 NC_001493.1 + 32010 0.67 0.956805
Target:  5'- cGCGCUCugGgauaggaccgugcgaUAUGCGUUUGucccccccucgaucGAGCUCa -3'
miRNA:   3'- -CGCGAGugCa--------------AUGCGCGAAC--------------CUUGAG- -5'
3056 3' -51.8 NC_001493.1 + 99730 0.68 0.953591
Target:  5'- gGCGCUCACGau-CGaUGUUUGGGucacugcccggACUCu -3'
miRNA:   3'- -CGCGAGUGCaauGC-GCGAACCU-----------UGAG- -5'
3056 3' -51.8 NC_001493.1 + 28438 0.68 0.940124
Target:  5'- aGCGC-CACGUUGCGaGCgaggcGGcGCUCc -3'
miRNA:   3'- -CGCGaGUGCAAUGCgCGaa---CCuUGAG- -5'
3056 3' -51.8 NC_001493.1 + 89206 0.69 0.924365
Target:  5'- aGCGCg-GCGUccuccccaugUACGCGCgUGGuGACUCc -3'
miRNA:   3'- -CGCGagUGCA----------AUGCGCGaACC-UUGAG- -5'
3056 3' -51.8 NC_001493.1 + 87952 0.71 0.85547
Target:  5'- -gGCUCACGggAUcgGCGCcUGGAGCg- -3'
miRNA:   3'- cgCGAGUGCaaUG--CGCGaACCUUGag -5'
3056 3' -51.8 NC_001493.1 + 61556 0.71 0.847289
Target:  5'- uUGCUCACGggGCGCGCcaucucUGGcucCUCg -3'
miRNA:   3'- cGCGAGUGCaaUGCGCGa-----ACCuu-GAG- -5'
3056 3' -51.8 NC_001493.1 + 43937 0.72 0.812544
Target:  5'- gGCGCgCAUGUaAUcgucaaagaGCGCUUGGAACUUc -3'
miRNA:   3'- -CGCGaGUGCAaUG---------CGCGAACCUUGAG- -5'
3056 3' -51.8 NC_001493.1 + 40029 1.13 0.003562
Target:  5'- uGCGCUCACGUUACGCGCUUGGAACUCg -3'
miRNA:   3'- -CGCGAGUGCAAUGCGCGAACCUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.