miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3056 5' -56.9 NC_001493.1 + 95375 0.66 0.865997
Target:  5'- uCGGGUCCaugGCGCccagguauaugguaGCGGguaaCGcCGAGCu -3'
miRNA:   3'- cGCCCAGGa--CGCG--------------UGCUaa--GC-GCUCG- -5'
3056 5' -56.9 NC_001493.1 + 28633 0.66 0.860741
Target:  5'- cGgGuGGUCCUGCGCgAUGAacucaCGCGcauGCa -3'
miRNA:   3'- -CgC-CCAGGACGCG-UGCUaa---GCGCu--CG- -5'
3056 5' -56.9 NC_001493.1 + 34274 0.66 0.853061
Target:  5'- gGUGGGUCCgccaGCuGC-CGGUUCG-GuGCg -3'
miRNA:   3'- -CGCCCAGGa---CG-CGuGCUAAGCgCuCG- -5'
3056 5' -56.9 NC_001493.1 + 27757 0.66 0.852282
Target:  5'- cGCGGGUCCccucgagGCGUcCGGUUaCGUuacuggaacgccgGGGCg -3'
miRNA:   3'- -CGCCCAGGa------CGCGuGCUAA-GCG-------------CUCG- -5'
3056 5' -56.9 NC_001493.1 + 90134 0.67 0.834661
Target:  5'- gGCcGGUCCgUGCGCgaccccggaggugaACGAUauacucaacgUCGCGAGg -3'
miRNA:   3'- -CGcCCAGG-ACGCG--------------UGCUA----------AGCGCUCg -5'
3056 5' -56.9 NC_001493.1 + 80947 0.68 0.785125
Target:  5'- aGCGcGGUUCUuCGCACGGUaC-CGGGCc -3'
miRNA:   3'- -CGC-CCAGGAcGCGUGCUAaGcGCUCG- -5'
3056 5' -56.9 NC_001493.1 + 10624 0.68 0.757189
Target:  5'- cCGGGUCCUccGCGguCGAgacucUCGgGAcGCg -3'
miRNA:   3'- cGCCCAGGA--CGCguGCUa----AGCgCU-CG- -5'
3056 5' -56.9 NC_001493.1 + 126178 0.68 0.757189
Target:  5'- cCGGGUCCUccGCGguCGAgacucUCGgGAcGCg -3'
miRNA:   3'- cGCCCAGGA--CGCguGCUa----AGCgCU-CG- -5'
3056 5' -56.9 NC_001493.1 + 109927 0.68 0.747647
Target:  5'- uGCGacgagCCUaGCGCGCGAUUUGCGAu- -3'
miRNA:   3'- -CGCcca--GGA-CGCGUGCUAAGCGCUcg -5'
3056 5' -56.9 NC_001493.1 + 37521 0.69 0.728274
Target:  5'- uGCuGGUaCUUGCGCAUGug-CGCGGGg -3'
miRNA:   3'- -CGcCCA-GGACGCGUGCuaaGCGCUCg -5'
3056 5' -56.9 NC_001493.1 + 45184 0.69 0.728274
Target:  5'- cCGGGUgCUGCGCGCauaUCGagguGAGCc -3'
miRNA:   3'- cGCCCAgGACGCGUGcuaAGCg---CUCG- -5'
3056 5' -56.9 NC_001493.1 + 111651 0.69 0.698623
Target:  5'- -gGGGUCCgacucuucggGCGUACc---CGCGAGCa -3'
miRNA:   3'- cgCCCAGGa---------CGCGUGcuaaGCGCUCG- -5'
3056 5' -56.9 NC_001493.1 + 124648 0.69 0.698623
Target:  5'- cCGGGUCUUuuGCGCGGUcaaCGgGAGCc -3'
miRNA:   3'- cGCCCAGGAcgCGUGCUAa--GCgCUCG- -5'
3056 5' -56.9 NC_001493.1 + 9093 0.69 0.698623
Target:  5'- cCGGGUCUUuuGCGCGGUcaaCGgGAGCc -3'
miRNA:   3'- cGCCCAGGAcgCGUGCUAa--GCgCUCG- -5'
3056 5' -56.9 NC_001493.1 + 85657 0.7 0.678566
Target:  5'- gGauGGUCUUGCGC-CGAUg-GUGGGCa -3'
miRNA:   3'- -CgcCCAGGACGCGuGCUAagCGCUCG- -5'
3056 5' -56.9 NC_001493.1 + 28523 0.7 0.668477
Target:  5'- cGCGGGUCUcacucucgcGCGCACaGAaUUGCGGGa -3'
miRNA:   3'- -CGCCCAGGa--------CGCGUG-CUaAGCGCUCg -5'
3056 5' -56.9 NC_001493.1 + 48328 0.71 0.577328
Target:  5'- uGCGGGaucucgaacUCCUGaaaCGCACGGUggaCGCGAcGCc -3'
miRNA:   3'- -CGCCC---------AGGAC---GCGUGCUAa--GCGCU-CG- -5'
3056 5' -56.9 NC_001493.1 + 91601 0.73 0.47973
Target:  5'- aGCuGGUCCUcCGC-CGG-UCGCGGGCg -3'
miRNA:   3'- -CGcCCAGGAcGCGuGCUaAGCGCUCG- -5'
3056 5' -56.9 NC_001493.1 + 48371 0.73 0.47973
Target:  5'- -aGGGgagguugagCCUGUGCACGA---GCGAGCg -3'
miRNA:   3'- cgCCCa--------GGACGCGUGCUaagCGCUCG- -5'
3056 5' -56.9 NC_001493.1 + 40064 1.13 0.001206
Target:  5'- aGCGGGUCCUGCGCACGAUUCGCGAGCu -3'
miRNA:   3'- -CGCCCAGGACGCGUGCUAAGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.