miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30560 3' -60.8 NC_006548.1 + 32573 0.66 0.363221
Target:  5'- uGGCCGUuuGCgCCGGaCUGGGCugAUGGCg- -3'
miRNA:   3'- -CCGGCGu-UG-GGUC-GGCCCG--UACUGgg -5'
30560 3' -60.8 NC_006548.1 + 36642 0.66 0.363221
Target:  5'- cGCCGCAuga-GGCCGGcGCGcUGAUCUg -3'
miRNA:   3'- cCGGCGUugggUCGGCC-CGU-ACUGGG- -5'
30560 3' -60.8 NC_006548.1 + 29340 0.66 0.354808
Target:  5'- uGGUCgGCGG-CCAGCCGGGUAUugucGAgCUg -3'
miRNA:   3'- -CCGG-CGUUgGGUCGGCCCGUA----CUgGG- -5'
30560 3' -60.8 NC_006548.1 + 21523 0.66 0.354808
Target:  5'- aGGCUaccgGCAGaaCGGCCGGGgCGauguagacgGACCCg -3'
miRNA:   3'- -CCGG----CGUUggGUCGGCCC-GUa--------CUGGG- -5'
30560 3' -60.8 NC_006548.1 + 6460 0.66 0.354808
Target:  5'- cGCCGC-GCCUGGCgCGuGCAcgaUGACCUc -3'
miRNA:   3'- cCGGCGuUGGGUCG-GCcCGU---ACUGGG- -5'
30560 3' -60.8 NC_006548.1 + 17282 0.66 0.340826
Target:  5'- cGGCUGCGcgccggggaaguuccACUCGGUcagccaaCGGGCcgGGCCg -3'
miRNA:   3'- -CCGGCGU---------------UGGGUCG-------GCCCGuaCUGGg -5'
30560 3' -60.8 NC_006548.1 + 36818 0.66 0.3384
Target:  5'- cGGCCuuauGC-GCCUGGCCGGGUgcugGUGugUg -3'
miRNA:   3'- -CCGG----CGuUGGGUCGGCCCG----UACugGg -5'
30560 3' -60.8 NC_006548.1 + 7274 0.66 0.3384
Target:  5'- aGCCGCGGCagAGCUGGGCcUGucGCUg -3'
miRNA:   3'- cCGGCGUUGggUCGGCCCGuAC--UGGg -5'
30560 3' -60.8 NC_006548.1 + 32465 0.66 0.3384
Target:  5'- cGGCgGCGACggcugCCGGCCaGGC-UGAUgCCa -3'
miRNA:   3'- -CCGgCGUUG-----GGUCGGcCCGuACUG-GG- -5'
30560 3' -60.8 NC_006548.1 + 14339 0.66 0.322549
Target:  5'- cGGCgaGCuGCCCAGCCGuGCA--GCCg -3'
miRNA:   3'- -CCGg-CGuUGGGUCGGCcCGUacUGGg -5'
30560 3' -60.8 NC_006548.1 + 29890 0.66 0.322549
Target:  5'- gGGUCau-GCCCGGCUGGGUugcGGCCg -3'
miRNA:   3'- -CCGGcguUGGGUCGGCCCGua-CUGGg -5'
30560 3' -60.8 NC_006548.1 + 23002 0.67 0.314835
Target:  5'- aGGCCgGCGGCCCAGuccaccCCGauaGUccGGCCCa -3'
miRNA:   3'- -CCGG-CGUUGGGUC------GGCc--CGuaCUGGG- -5'
30560 3' -60.8 NC_006548.1 + 18384 0.67 0.314835
Target:  5'- uGGCgCGUAGuCCCAGCCaGGGuCGauACCUu -3'
miRNA:   3'- -CCG-GCGUU-GGGUCGG-CCC-GUacUGGG- -5'
30560 3' -60.8 NC_006548.1 + 36402 0.67 0.314835
Target:  5'- cGGCCGCAuGCCCAGCgcagCGaGG-AUG-CCUg -3'
miRNA:   3'- -CCGGCGU-UGGGUCG----GC-CCgUACuGGG- -5'
30560 3' -60.8 NC_006548.1 + 25075 0.67 0.314835
Target:  5'- aGCC-CGcCCCGGCCaccgauccagGGGCGgaUGACCUg -3'
miRNA:   3'- cCGGcGUuGGGUCGG----------CCCGU--ACUGGG- -5'
30560 3' -60.8 NC_006548.1 + 33011 0.67 0.314835
Target:  5'- -uUCGCAccGCCCAGuuGacggaacaaccGGCGcUGACCCg -3'
miRNA:   3'- ccGGCGU--UGGGUCggC-----------CCGU-ACUGGG- -5'
30560 3' -60.8 NC_006548.1 + 24026 0.67 0.30726
Target:  5'- aGUCGCGagcGCCUgccaGGCCGGGCgGUGuCCa -3'
miRNA:   3'- cCGGCGU---UGGG----UCGGCCCG-UACuGGg -5'
30560 3' -60.8 NC_006548.1 + 36646 0.67 0.30726
Target:  5'- -aCCGCgGugCCGGCCGcGGCGuUGAUCg -3'
miRNA:   3'- ccGGCG-UugGGUCGGC-CCGU-ACUGGg -5'
30560 3' -60.8 NC_006548.1 + 24369 0.67 0.30726
Target:  5'- gGGCCGgAAaCguGCCGGcCuUGACCCu -3'
miRNA:   3'- -CCGGCgUUgGguCGGCCcGuACUGGG- -5'
30560 3' -60.8 NC_006548.1 + 29665 0.67 0.299826
Target:  5'- cGGCCGCAAgaCUGGCUGcGGCu---CCCu -3'
miRNA:   3'- -CCGGCGUUg-GGUCGGC-CCGuacuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.