miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30560 5' -51.4 NC_006548.1 + 18447 0.66 0.812563
Target:  5'- -gGGugG-CAGC-GGCGUGGUcuucugcaGGGCg -3'
miRNA:   3'- gaCCugUaGUUGuUCGCACCAa-------CCCG- -5'
30560 5' -51.4 NC_006548.1 + 9631 0.67 0.749649
Target:  5'- -gGGAuCAggucgauaugcUCGACAGGUGgcugGGUgcgGGGCa -3'
miRNA:   3'- gaCCU-GU-----------AGUUGUUCGCa---CCAa--CCCG- -5'
30560 5' -51.4 NC_006548.1 + 23822 0.68 0.71508
Target:  5'- cCUGGGCcagCAGCAcauaggcugcuGGCGUGcggaaaucucgcaGUUGGGUg -3'
miRNA:   3'- -GACCUGua-GUUGU-----------UCGCAC-------------CAACCCG- -5'
30560 5' -51.4 NC_006548.1 + 25370 0.69 0.670387
Target:  5'- cCUGGGCAaugagcugcgCGACcAGCGaaUGG-UGGGCg -3'
miRNA:   3'- -GACCUGUa---------GUUGuUCGC--ACCaACCCG- -5'
30560 5' -51.4 NC_006548.1 + 6536 0.69 0.658799
Target:  5'- cCUGGGCAUCGaggucaucguGCAcgcgccagggcGGCGcgGGUUacGGGCu -3'
miRNA:   3'- -GACCUGUAGU----------UGU-----------UCGCa-CCAA--CCCG- -5'
30560 5' -51.4 NC_006548.1 + 3991 0.69 0.657638
Target:  5'- uCUGG-CGUCAACAuccaucAGCGgGGUguacgcgUGGGUg -3'
miRNA:   3'- -GACCuGUAGUUGU------UCGCaCCA-------ACCCG- -5'
30560 5' -51.4 NC_006548.1 + 27957 0.69 0.651832
Target:  5'- cCUGGGCAccaacacaaagcagcUCAGCGAGUGgcUGGaaaaGGGCc -3'
miRNA:   3'- -GACCUGU---------------AGUUGUUCGC--ACCaa--CCCG- -5'
30560 5' -51.4 NC_006548.1 + 1150 0.7 0.577565
Target:  5'- uUGGGCGUCAGCGAugcugagcuGCGccGGcUGGGUc -3'
miRNA:   3'- gACCUGUAGUUGUU---------CGCa-CCaACCCG- -5'
30560 5' -51.4 NC_006548.1 + 34013 0.71 0.532011
Target:  5'- -gGGACAUCcacuggAACGAGCcccaggggcuuGUGGUguggaUGGGCa -3'
miRNA:   3'- gaCCUGUAG------UUGUUCG-----------CACCA-----ACCCG- -5'
30560 5' -51.4 NC_006548.1 + 29861 1.13 0.000872
Target:  5'- cCUGGACAUCAACAAGCGUGGUUGGGCu -3'
miRNA:   3'- -GACCUGUAGUUGUUCGCACCAACCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.