miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30561 5' -56.9 NC_006548.1 + 22502 0.66 0.491064
Target:  5'- cUCcGAGggGCGGCcaGAgcgGCCGCCCa- -3'
miRNA:   3'- aAGuCUCgaUGCCG--CUa--UGGCGGGac -5'
30561 5' -56.9 NC_006548.1 + 25273 0.66 0.491064
Target:  5'- aUCGGAucauCGGCGuccuUGCCGCCCa- -3'
miRNA:   3'- aAGUCUcgauGCCGCu---AUGGCGGGac -5'
30561 5' -56.9 NC_006548.1 + 17435 0.66 0.491064
Target:  5'- aUCAGccguccgacccAGCaGCGGCGAUggcGCCGCagCUGg -3'
miRNA:   3'- aAGUC-----------UCGaUGCCGCUA---UGGCGg-GAC- -5'
30561 5' -56.9 NC_006548.1 + 3962 0.66 0.491064
Target:  5'- cUUCAGGGCUuccCGGCaGuccUGCuCGCUCUGg -3'
miRNA:   3'- -AAGUCUCGAu--GCCG-Cu--AUG-GCGGGAC- -5'
30561 5' -56.9 NC_006548.1 + 29878 0.66 0.459763
Target:  5'- -gCuGGGUUGCGGCc--GCCGCCCg- -3'
miRNA:   3'- aaGuCUCGAUGCCGcuaUGGCGGGac -5'
30561 5' -56.9 NC_006548.1 + 11728 0.67 0.415862
Target:  5'- -cCGGGGUUGCGGCGAUGacaugacgaugcucCCGauaggguggccauCCCUGg -3'
miRNA:   3'- aaGUCUCGAUGCCGCUAU--------------GGC-------------GGGAC- -5'
30561 5' -56.9 NC_006548.1 + 21216 0.67 0.410076
Target:  5'- aUCAcGAuacgGCggGCGGCGAUGgCGCCgCUGg -3'
miRNA:   3'- aAGU-CU----CGa-UGCCGCUAUgGCGG-GAC- -5'
30561 5' -56.9 NC_006548.1 + 33308 0.67 0.409117
Target:  5'- --aGGAGCaUGCGGCGcUGCgcagccugcuguaCGCCCUGc -3'
miRNA:   3'- aagUCUCG-AUGCCGCuAUG-------------GCGGGAC- -5'
30561 5' -56.9 NC_006548.1 + 26357 0.68 0.381913
Target:  5'- -cCAGAGCUACGGa---ACCGCCa-- -3'
miRNA:   3'- aaGUCUCGAUGCCgcuaUGGCGGgac -5'
30561 5' -56.9 NC_006548.1 + 34453 0.68 0.363867
Target:  5'- --aGGAGCaACaGCGAggUGCCGCCCa- -3'
miRNA:   3'- aagUCUCGaUGcCGCU--AUGGCGGGac -5'
30561 5' -56.9 NC_006548.1 + 30438 0.7 0.268335
Target:  5'- gUUCAauGCUGgGGCGAUcCCGCCCg- -3'
miRNA:   3'- -AAGUcuCGAUgCCGCUAuGGCGGGac -5'
30561 5' -56.9 NC_006548.1 + 32654 0.7 0.268335
Target:  5'- gUC-GAGCaACGGCGAUcGCUGCgCCUGu -3'
miRNA:   3'- aAGuCUCGaUGCCGCUA-UGGCG-GGAC- -5'
30561 5' -56.9 NC_006548.1 + 17519 0.72 0.205087
Target:  5'- cUUCGGccAGCUGCGGCGccAUCGCCgCUGc -3'
miRNA:   3'- -AAGUC--UCGAUGCCGCuaUGGCGG-GAC- -5'
30561 5' -56.9 NC_006548.1 + 30376 1.07 0.000512
Target:  5'- aUUCAGAGCUACGGCGAUACCGCCCUGg -3'
miRNA:   3'- -AAGUCUCGAUGCCGCUAUGGCGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.