miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30562 5' -53.2 NC_006548.1 + 36832 0.66 0.751851
Target:  5'- -aGCGAg-UCGAcCGGCGCgaggcucUCUGCGa -3'
miRNA:   3'- ccCGCUgaAGCU-GCCGCGaa-----AGAUGC- -5'
30562 5' -53.2 NC_006548.1 + 35941 0.66 0.75185
Target:  5'- cGGCGAgUUggccggcagggUGGCGGCGCgcgaCUGCa -3'
miRNA:   3'- cCCGCUgAA-----------GCUGCCGCGaaa-GAUGc -5'
30562 5' -53.2 NC_006548.1 + 16552 0.66 0.737911
Target:  5'- cGGCGugUUCuACGGUuacgcgguauccgaGCUgaUCUACGg -3'
miRNA:   3'- cCCGCugAAGcUGCCG--------------CGAa-AGAUGC- -5'
30562 5' -53.2 NC_006548.1 + 18448 0.67 0.708382
Target:  5'- cGGGUGGCa---GCGGCGUggucUUCUGCa -3'
miRNA:   3'- -CCCGCUGaagcUGCCGCGa---AAGAUGc -5'
30562 5' -53.2 NC_006548.1 + 17956 0.67 0.708381
Target:  5'- aGGGUGGCcagccUGGCgGGCGCgagugaUCUACGa -3'
miRNA:   3'- -CCCGCUGaa---GCUG-CCGCGaa----AGAUGC- -5'
30562 5' -53.2 NC_006548.1 + 23775 0.68 0.663645
Target:  5'- uGGGUGAUcgugccaagUUCGGCGGCGCcgcCcACGu -3'
miRNA:   3'- -CCCGCUG---------AAGCUGCCGCGaaaGaUGC- -5'
30562 5' -53.2 NC_006548.1 + 26339 0.68 0.629722
Target:  5'- cGGCGGCcgggUCGAUGGCcagagCUACGg -3'
miRNA:   3'- cCCGCUGa---AGCUGCCGcgaaaGAUGC- -5'
30562 5' -53.2 NC_006548.1 + 36009 0.69 0.551109
Target:  5'- aGGuGCGGC-UCGAuCGGCGCgc-CUAUGc -3'
miRNA:   3'- -CC-CGCUGaAGCU-GCCGCGaaaGAUGC- -5'
30562 5' -53.2 NC_006548.1 + 11745 0.7 0.507475
Target:  5'- -cGCGGCgcgCGGCGGCGCcggggUUGCGg -3'
miRNA:   3'- ccCGCUGaa-GCUGCCGCGaaa--GAUGC- -5'
30562 5' -53.2 NC_006548.1 + 3334 0.71 0.486208
Target:  5'- cGGUGAUUUCGggguACGGCGUg--CUGCa -3'
miRNA:   3'- cCCGCUGAAGC----UGCCGCGaaaGAUGc -5'
30562 5' -53.2 NC_006548.1 + 13386 0.71 0.445013
Target:  5'- cGGCGGaaUCGGCGcGCGCUc-CUGCGg -3'
miRNA:   3'- cCCGCUgaAGCUGC-CGCGAaaGAUGC- -5'
30562 5' -53.2 NC_006548.1 + 30973 1.11 0.000919
Target:  5'- uGGGCGACUUCGACGGCGCUUUCUACGu -3'
miRNA:   3'- -CCCGCUGAAGCUGCCGCGAAAGAUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.