Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30563 | 3' | -55.5 | NC_006548.1 | + | 31453 | 0.66 | 0.641776 |
Target: 5'- cACGUCGaGAucGCG-GCAGGucaGUUCCg -3' miRNA: 3'- -UGCAGCaCU--CGCaCGUCCuugCAGGG- -5' |
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30563 | 3' | -55.5 | NC_006548.1 | + | 11597 | 0.66 | 0.6306 |
Target: 5'- gAUGUCc-GGGCGUccuGCAGGAGCaGgaugCCCa -3' miRNA: 3'- -UGCAGcaCUCGCA---CGUCCUUG-Ca---GGG- -5' |
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30563 | 3' | -55.5 | NC_006548.1 | + | 17574 | 0.67 | 0.563915 |
Target: 5'- uGC-UCGaUGAGCGUGCGcaguuGGGuCGUCCa -3' miRNA: 3'- -UGcAGC-ACUCGCACGU-----CCUuGCAGGg -5' |
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30563 | 3' | -55.5 | NC_006548.1 | + | 29475 | 0.68 | 0.519399 |
Target: 5'- aACGUCGgccAGCGaucgcugaccgccUGCAGGAACGauaCCg -3' miRNA: 3'- -UGCAGCac-UCGC-------------ACGUCCUUGCag-GG- -5' |
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30563 | 3' | -55.5 | NC_006548.1 | + | 19351 | 0.68 | 0.488762 |
Target: 5'- cCGUC--GAGCGUG-AGGAucuUGUCCCg -3' miRNA: 3'- uGCAGcaCUCGCACgUCCUu--GCAGGG- -5' |
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30563 | 3' | -55.5 | NC_006548.1 | + | 10651 | 0.69 | 0.457991 |
Target: 5'- gAUGUCGaUGAGC-UGgAGGAGCGUUUg -3' miRNA: 3'- -UGCAGC-ACUCGcACgUCCUUGCAGGg -5' |
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30563 | 3' | -55.5 | NC_006548.1 | + | 32303 | 1.12 | 0.000405 |
Target: 5'- aACGUCGUGAGCGUGCAGGAACGUCCCg -3' miRNA: 3'- -UGCAGCACUCGCACGUCCUUGCAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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