miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30563 5' -59 NC_006548.1 + 35055 0.66 0.399749
Target:  5'- -cGGc-CGCCCAUUgcuCGCCuCCGCAc -3'
miRNA:   3'- aaCCuuGCGGGUGAaguGCGG-GGCGU- -5'
30563 5' -59 NC_006548.1 + 1542 0.66 0.39051
Target:  5'- aUGGAGCGCuaCCACUcCACuGCCggcgaCCGCc -3'
miRNA:   3'- aACCUUGCG--GGUGAaGUG-CGG-----GGCGu -5'
30563 5' -59 NC_006548.1 + 36214 0.66 0.381412
Target:  5'- cUGGAcccCGCCCGac-CGCaCCCCGCGg -3'
miRNA:   3'- aACCUu--GCGGGUgaaGUGcGGGGCGU- -5'
30563 5' -59 NC_006548.1 + 32822 0.66 0.381412
Target:  5'- -cGGcAGCGCCCAgaUCcgccCGCCCCaGCc -3'
miRNA:   3'- aaCC-UUGCGGGUgaAGu---GCGGGG-CGu -5'
30563 5' -59 NC_006548.1 + 19671 0.66 0.381412
Target:  5'- -cGGAGCGCgCGCUgcagauaGCGCucuaCCCGCu -3'
miRNA:   3'- aaCCUUGCGgGUGAag-----UGCG----GGGCGu -5'
30563 5' -59 NC_006548.1 + 21625 0.67 0.34646
Target:  5'- cUGGAAguacgaccuCGCCCaggGCUUCAcCGUCCCGgAa -3'
miRNA:   3'- aACCUU---------GCGGG---UGAAGU-GCGGGGCgU- -5'
30563 5' -59 NC_006548.1 + 9723 0.67 0.306083
Target:  5'- -aGGAACa-CCGC--CAUGCCCCGCAc -3'
miRNA:   3'- aaCCUUGcgGGUGaaGUGCGGGGCGU- -5'
30563 5' -59 NC_006548.1 + 29985 0.68 0.269411
Target:  5'- -gGGAAUGCUgGCUaugccgcccgUCGCGUgCCGCAc -3'
miRNA:   3'- aaCCUUGCGGgUGA----------AGUGCGgGGCGU- -5'
30563 5' -59 NC_006548.1 + 6384 0.69 0.249157
Target:  5'- gUGGcGCGCCCACUUCaAUGCgacggCCGUAc -3'
miRNA:   3'- aACCuUGCGGGUGAAG-UGCGg----GGCGU- -5'
30563 5' -59 NC_006548.1 + 33308 0.7 0.22653
Target:  5'- -aGGAGCaugcggcgcugcgcaGCCUGCUgUACGCCCUGCGu -3'
miRNA:   3'- aaCCUUG---------------CGGGUGAaGUGCGGGGCGU- -5'
30563 5' -59 NC_006548.1 + 21538 0.7 0.224127
Target:  5'- aUGGAGCGCUC-CUUCAgGCuaCCgGCAg -3'
miRNA:   3'- aACCUUGCGGGuGAAGUgCG--GGgCGU- -5'
30563 5' -59 NC_006548.1 + 17052 0.74 0.108792
Target:  5'- -cGGAGCGCCCgGCUUCcaGCaGCUCCGCc -3'
miRNA:   3'- aaCCUUGCGGG-UGAAG--UG-CGGGGCGu -5'
30563 5' -59 NC_006548.1 + 32337 1.05 0.000405
Target:  5'- uUUGGAACGCCCACUUCACGCCCCGCAc -3'
miRNA:   3'- -AACCUUGCGGGUGAAGUGCGGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.