miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30565 5' -57.5 NC_006548.1 + 29410 0.66 0.516243
Target:  5'- aGGCGGu-CAGCCGauCGCUGGCCgaCGUu -3'
miRNA:   3'- aCUGCCuuGUUGGCc-GCGACUGG--GCA- -5'
30565 5' -57.5 NC_006548.1 + 31934 0.66 0.516243
Target:  5'- cGACGGAACcgacACCuGGCGCgucuuCCCu- -3'
miRNA:   3'- aCUGCCUUGu---UGG-CCGCGacu--GGGca -5'
30565 5' -57.5 NC_006548.1 + 12198 0.66 0.516243
Target:  5'- aGugGGGACugUCGGCGCcGAUCg-- -3'
miRNA:   3'- aCugCCUUGuuGGCCGCGaCUGGgca -5'
30565 5' -57.5 NC_006548.1 + 32249 0.66 0.505682
Target:  5'- aUGACGu--CAACCGGCuGgUGugCCGc -3'
miRNA:   3'- -ACUGCcuuGUUGGCCG-CgACugGGCa -5'
30565 5' -57.5 NC_006548.1 + 16985 0.66 0.504631
Target:  5'- aGGCGGAGCugcuggaAGCCgGGCGCUccggGACCg-- -3'
miRNA:   3'- aCUGCCUUG-------UUGG-CCGCGA----CUGGgca -5'
30565 5' -57.5 NC_006548.1 + 36894 0.66 0.484847
Target:  5'- cGugGGcgcaccGCAACCGGCuGCUGcaGgCCGUc -3'
miRNA:   3'- aCugCCu-----UGUUGGCCG-CGAC--UgGGCA- -5'
30565 5' -57.5 NC_006548.1 + 13326 0.66 0.463422
Target:  5'- ---aGGAGCGcgcgccgauuccGCCGGCGCucaaacagcgaccUGGCCCGc -3'
miRNA:   3'- acugCCUUGU------------UGGCCGCG-------------ACUGGGCa -5'
30565 5' -57.5 NC_006548.1 + 25854 0.67 0.444472
Target:  5'- gUGGCGGAugucACCGcCuGCUGGCCCGc -3'
miRNA:   3'- -ACUGCCUugu-UGGCcG-CGACUGGGCa -5'
30565 5' -57.5 NC_006548.1 + 12634 0.67 0.444472
Target:  5'- uUGGCGGccgAGCGcCCGGCGUUGaagcGCUCGa -3'
miRNA:   3'- -ACUGCC---UUGUuGGCCGCGAC----UGGGCa -5'
30565 5' -57.5 NC_006548.1 + 32948 0.67 0.434675
Target:  5'- cGGCGauuCAACUGGCGC--GCCCGg -3'
miRNA:   3'- aCUGCcuuGUUGGCCGCGacUGGGCa -5'
30565 5' -57.5 NC_006548.1 + 6171 0.68 0.406054
Target:  5'- gGACGuGAacguccACGACCGuGUGCUGAucaCCCGc -3'
miRNA:   3'- aCUGC-CU------UGUUGGC-CGCGACU---GGGCa -5'
30565 5' -57.5 NC_006548.1 + 20459 0.69 0.352508
Target:  5'- uUGugGGAugAGCUGGUc--GGCCCGUu -3'
miRNA:   3'- -ACugCCUugUUGGCCGcgaCUGGGCA- -5'
30565 5' -57.5 NC_006548.1 + 33138 0.69 0.327674
Target:  5'- --cCGGGGCuGGCCGGUGCUcgggcagcGGCCCGa -3'
miRNA:   3'- acuGCCUUG-UUGGCCGCGA--------CUGGGCa -5'
30565 5' -57.5 NC_006548.1 + 3670 0.69 0.327674
Target:  5'- aGGCGGug-AACUGGCGCUGGCUg-- -3'
miRNA:   3'- aCUGCCuugUUGGCCGCGACUGGgca -5'
30565 5' -57.5 NC_006548.1 + 21299 0.7 0.296613
Target:  5'- cGGCGGGAauuUCGGUGCUGAUgCCGa -3'
miRNA:   3'- aCUGCCUUguuGGCCGCGACUG-GGCa -5'
30565 5' -57.5 NC_006548.1 + 28967 0.7 0.281961
Target:  5'- -cACGGGugAcACCgaaGGCGCUGGCCUGg -3'
miRNA:   3'- acUGCCUugU-UGG---CCGCGACUGGGCa -5'
30565 5' -57.5 NC_006548.1 + 33306 0.73 0.174992
Target:  5'- cGA-GGAGCAugCGGCGCUGcgcaGCCUGc -3'
miRNA:   3'- aCUgCCUUGUugGCCGCGAC----UGGGCa -5'
30565 5' -57.5 NC_006548.1 + 36696 0.74 0.161134
Target:  5'- cGcCGGccuCAugCGGCGCUGGCaCCGUa -3'
miRNA:   3'- aCuGCCuu-GUugGCCGCGACUG-GGCA- -5'
30565 5' -57.5 NC_006548.1 + 21516 0.74 0.152453
Target:  5'- cGGCaGAACGGCCGGgGCgauguagacgGACCCGa -3'
miRNA:   3'- aCUGcCUUGUUGGCCgCGa---------CUGGGCa -5'
30565 5' -57.5 NC_006548.1 + 33025 1.07 0.000584
Target:  5'- uUGACGGAACAACCGGCGCUGACCCGUc -3'
miRNA:   3'- -ACUGCCUUGUUGGCCGCGACUGGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.