miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30566 3' -55.1 NC_006548.1 + 23660 0.66 0.645349
Target:  5'- uGGUGaUCGAGCGCUUGcGUGAUCa--- -3'
miRNA:   3'- gCUGC-AGCUCGCGAAC-CGCUAGcugu -5'
30566 3' -55.1 NC_006548.1 + 16048 0.66 0.634144
Target:  5'- cCGACGaguUCuGGGCGCUgggucUGGCGAUCcAUg -3'
miRNA:   3'- -GCUGC---AG-CUCGCGA-----ACCGCUAGcUGu -5'
30566 3' -55.1 NC_006548.1 + 22675 0.66 0.634144
Target:  5'- gGACGcCGccaCGC-UGGCGAUCGAgCAg -3'
miRNA:   3'- gCUGCaGCuc-GCGaACCGCUAGCU-GU- -5'
30566 3' -55.1 NC_006548.1 + 25536 0.67 0.600556
Target:  5'- aGACGUCugcccAGCGCggaGGCGugccUCGGCGc -3'
miRNA:   3'- gCUGCAGc----UCGCGaa-CCGCu---AGCUGU- -5'
30566 3' -55.1 NC_006548.1 + 12633 0.67 0.556202
Target:  5'- uGGCGgcCGAGCGCccGGCGuugaagcgcUCGACGg -3'
miRNA:   3'- gCUGCa-GCUCGCGaaCCGCu--------AGCUGU- -5'
30566 3' -55.1 NC_006548.1 + 9208 0.68 0.512846
Target:  5'- -uGCGUCGAuGCGCUcGGCGuUUGugGc -3'
miRNA:   3'- gcUGCAGCU-CGCGAaCCGCuAGCugU- -5'
30566 3' -55.1 NC_006548.1 + 17450 0.68 0.491687
Target:  5'- aGGCGUCG-GCGCcgUGGCc-UCGGCc -3'
miRNA:   3'- gCUGCAGCuCGCGa-ACCGcuAGCUGu -5'
30566 3' -55.1 NC_006548.1 + 4763 0.73 0.277967
Target:  5'- aGGCGcuucaggugcUUGAGCGU--GGCGAUCGGCAg -3'
miRNA:   3'- gCUGC----------AGCUCGCGaaCCGCUAGCUGU- -5'
30566 3' -55.1 NC_006548.1 + 18798 0.73 0.277251
Target:  5'- uGGCGUCGAGCagcacggccugcgGCUgGGCGAggaucugCGGCAg -3'
miRNA:   3'- gCUGCAGCUCG-------------CGAaCCGCUa------GCUGU- -5'
30566 3' -55.1 NC_006548.1 + 12555 0.73 0.257131
Target:  5'- uCGAuucCGUCGAGCGCUUcaacgccgGGCGcUCGGCc -3'
miRNA:   3'- -GCU---GCAGCUCGCGAA--------CCGCuAGCUGu -5'
30566 3' -55.1 NC_006548.1 + 9002 0.79 0.112335
Target:  5'- gCGGgGUCGAGCGCcUGGCcAUCGACc -3'
miRNA:   3'- -GCUgCAGCUCGCGaACCGcUAGCUGu -5'
30566 3' -55.1 NC_006548.1 + 33560 1.09 0.000781
Target:  5'- uCGACGUCGAGCGCUUGGCGAUCGACAg -3'
miRNA:   3'- -GCUGCAGCUCGCGAACCGCUAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.