miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30566 5' -59.1 NC_006548.1 + 1196 0.66 0.453681
Target:  5'- cGCACaggCGUUG-CUGGCCGcGCaGACGg -3'
miRNA:   3'- cCGUG---GCAACaGGCCGGCuCG-CUGCa -5'
30566 5' -59.1 NC_006548.1 + 32879 0.66 0.443952
Target:  5'- --gACCGUuugUGcgCCGGCCGcGGUGACGc -3'
miRNA:   3'- ccgUGGCA---ACa-GGCCGGC-UCGCUGCa -5'
30566 5' -59.1 NC_006548.1 + 35852 0.66 0.434342
Target:  5'- uGGUucGCCGUg--CC-GUCGAGCGAUGUg -3'
miRNA:   3'- -CCG--UGGCAacaGGcCGGCUCGCUGCA- -5'
30566 5' -59.1 NC_006548.1 + 26104 0.66 0.424853
Target:  5'- cGGCACUGUUcuUCCuacGGCCGGuGcCGGCGg -3'
miRNA:   3'- -CCGUGGCAAc-AGG---CCGGCU-C-GCUGCa -5'
30566 5' -59.1 NC_006548.1 + 28961 0.66 0.41178
Target:  5'- cGGCGCCGgccgccucgacgGUuuGGCCG-GUGGCc- -3'
miRNA:   3'- -CCGUGGCaa----------CAggCCGGCuCGCUGca -5'
30566 5' -59.1 NC_006548.1 + 27974 0.67 0.406254
Target:  5'- cGCGCCGggaacgcgCUGGCCGAGCuGCa- -3'
miRNA:   3'- cCGUGGCaaca----GGCCGGCUCGcUGca -5'
30566 5' -59.1 NC_006548.1 + 35941 0.67 0.397148
Target:  5'- cGGCGa-GUUGgCCGGCaGGGUGGCGg -3'
miRNA:   3'- -CCGUggCAACaGGCCGgCUCGCUGCa -5'
30566 5' -59.1 NC_006548.1 + 12832 0.67 0.370631
Target:  5'- cGGCGCgGUaaGUCCGGUguggcuCGGGCGAaaCGUa -3'
miRNA:   3'- -CCGUGgCAa-CAGGCCG------GCUCGCU--GCA- -5'
30566 5' -59.1 NC_006548.1 + 28331 0.67 0.370631
Target:  5'- cGGCGCgCGUgaacgGUCCcGCCG-GUGAUGa -3'
miRNA:   3'- -CCGUG-GCAa----CAGGcCGGCuCGCUGCa -5'
30566 5' -59.1 NC_006548.1 + 22302 0.68 0.329194
Target:  5'- uGGUGCCGUUGcgggugUCGGCCaGGCGAUc- -3'
miRNA:   3'- -CCGUGGCAACa-----GGCCGGcUCGCUGca -5'
30566 5' -59.1 NC_006548.1 + 7054 0.68 0.313604
Target:  5'- aGGCGCuucgCGUuaUGUCgGGCCGAGUGGa-- -3'
miRNA:   3'- -CCGUG----GCA--ACAGgCCGGCUCGCUgca -5'
30566 5' -59.1 NC_006548.1 + 21523 0.69 0.29858
Target:  5'- aGGCuACCGgcagaaCGGCCgGGGCGAUGUa -3'
miRNA:   3'- -CCG-UGGCaacag-GCCGG-CUCGCUGCA- -5'
30566 5' -59.1 NC_006548.1 + 35741 0.69 0.284119
Target:  5'- cGCAgCGUccagaGUCCGGUCGAGCGGg-- -3'
miRNA:   3'- cCGUgGCAa----CAGGCCGGCUCGCUgca -5'
30566 5' -59.1 NC_006548.1 + 33279 0.69 0.283411
Target:  5'- cGGCuuCCGUUGgcagaccUCCGGCCGcgaggagcauGCGGCGc -3'
miRNA:   3'- -CCGu-GGCAAC-------AGGCCGGCu---------CGCUGCa -5'
30566 5' -59.1 NC_006548.1 + 20102 0.7 0.263475
Target:  5'- uGGUGCCGgaGUUC-GCCGAgGCGGCGa -3'
miRNA:   3'- -CCGUGGCaaCAGGcCGGCU-CGCUGCa -5'
30566 5' -59.1 NC_006548.1 + 22728 0.7 0.244065
Target:  5'- aGGUGCuCGUg--CCGGCCG-GCGAUGa -3'
miRNA:   3'- -CCGUG-GCAacaGGCCGGCuCGCUGCa -5'
30566 5' -59.1 NC_006548.1 + 22242 0.7 0.237865
Target:  5'- aGGCGCgaaucagguuCGgguucUGccCCGGCCGAGCGAUGUu -3'
miRNA:   3'- -CCGUG----------GCa----ACa-GGCCGGCUCGCUGCA- -5'
30566 5' -59.1 NC_006548.1 + 36649 0.72 0.187831
Target:  5'- aGCACCGcgGUgCCGGCC--GCGGCGUu -3'
miRNA:   3'- cCGUGGCaaCA-GGCCGGcuCGCUGCA- -5'
30566 5' -59.1 NC_006548.1 + 37544 0.72 0.182883
Target:  5'- cGGCGCCGgcgGUUgGGCUGAGUGGacUGUg -3'
miRNA:   3'- -CCGUGGCaa-CAGgCCGGCUCGCU--GCA- -5'
30566 5' -59.1 NC_006548.1 + 17462 0.73 0.155555
Target:  5'- uGGCGCCGcag-CUGGCCGAaGCGAUGc -3'
miRNA:   3'- -CCGUGGCaacaGGCCGGCU-CGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.