miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30567 3' -53.7 NC_006548.1 + 1118 0.67 0.630486
Target:  5'- gAGCgAGCcUGGCCg-UC-UGCGCGGCCa -3'
miRNA:   3'- -UUG-UUGuACUGGaaAGcGCGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 2001 0.68 0.539355
Target:  5'- uGCcGCG-GGCaag-CGCGCGCGGCUg -3'
miRNA:   3'- uUGuUGUaCUGgaaaGCGCGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 2801 0.66 0.676413
Target:  5'- cAGCGugAUGACC--UC-CGCGCGaGCa -3'
miRNA:   3'- -UUGUugUACUGGaaAGcGCGCGC-CGg -5'
30567 3' -53.7 NC_006548.1 + 2940 0.71 0.374916
Target:  5'- cGACAACAUcGCCUUcgacgaGCGCcugcagGCGGCCa -3'
miRNA:   3'- -UUGUUGUAcUGGAAag----CGCG------CGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 4102 0.7 0.442842
Target:  5'- uGCAAgGUGACCcuccCGCGgGUGGUCu -3'
miRNA:   3'- uUGUUgUACUGGaaa-GCGCgCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 4836 0.66 0.669551
Target:  5'- cGGCGGCAuggcUGACCUUcaaggcucggugcaaUUGCGCgaaGCGuGCCu -3'
miRNA:   3'- -UUGUUGU----ACUGGAA---------------AGCGCG---CGC-CGG- -5'
30567 3' -53.7 NC_006548.1 + 4971 0.69 0.483568
Target:  5'- -cCAugAUGGCUgcggUUGCGCcacuggaGCGGCCg -3'
miRNA:   3'- uuGUugUACUGGaa--AGCGCG-------CGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 5851 0.72 0.348041
Target:  5'- gAACGGCcuUGGCCU--UGCGCGCaGCCu -3'
miRNA:   3'- -UUGUUGu-ACUGGAaaGCGCGCGcCGG- -5'
30567 3' -53.7 NC_006548.1 + 5853 0.66 0.699149
Target:  5'- cGACGACAcccaacUGcccACCUUUaugcCGCGaCGCGGCa -3'
miRNA:   3'- -UUGUUGU------AC---UGGAAA----GCGC-GCGCCGg -5'
30567 3' -53.7 NC_006548.1 + 6770 0.67 0.630486
Target:  5'- gGAUcGCGUGGCCgcugacCGUGUGUGGUCc -3'
miRNA:   3'- -UUGuUGUACUGGaaa---GCGCGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 7675 0.7 0.453104
Target:  5'- uGACGGCc-GACCa---GCGCGCGGCa -3'
miRNA:   3'- -UUGUUGuaCUGGaaagCGCGCGCCGg -5'
30567 3' -53.7 NC_006548.1 + 8719 0.69 0.50623
Target:  5'- --aGACAaGACCUUggaCGCGCuGCGGgCg -3'
miRNA:   3'- uugUUGUaCUGGAAa--GCGCG-CGCCgG- -5'
30567 3' -53.7 NC_006548.1 + 9515 0.67 0.618979
Target:  5'- -cCAGCAggaGGCUgcucuggUGCGCGuCGGCCa -3'
miRNA:   3'- uuGUUGUa--CUGGaaa----GCGCGC-GCCGG- -5'
30567 3' -53.7 NC_006548.1 + 11805 0.72 0.348041
Target:  5'- -----gGUGACCUUggGCGCGgUGGCCg -3'
miRNA:   3'- uuguugUACUGGAAagCGCGC-GCCGG- -5'
30567 3' -53.7 NC_006548.1 + 13073 0.72 0.314396
Target:  5'- cGCAGCGUcACCc-UCG-GCGCGGCCg -3'
miRNA:   3'- uUGUUGUAcUGGaaAGCgCGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 13189 0.68 0.573184
Target:  5'- uGCAGCAguugcuccucGGCCUgguuggCGCGCGCGaCCu -3'
miRNA:   3'- uUGUUGUa---------CUGGAaa----GCGCGCGCcGG- -5'
30567 3' -53.7 NC_006548.1 + 14715 0.69 0.483568
Target:  5'- gAGCAGC---GCCUggCGCGCGCguuccucGGCCu -3'
miRNA:   3'- -UUGUUGuacUGGAaaGCGCGCG-------CCGG- -5'
30567 3' -53.7 NC_006548.1 + 16042 0.67 0.583436
Target:  5'- cGCAGCcgucgucugcuugGUGACC--UCGCGCaagGCGGCg -3'
miRNA:   3'- uUGUUG-------------UACUGGaaAGCGCG---CGCCGg -5'
30567 3' -53.7 NC_006548.1 + 20768 0.69 0.484636
Target:  5'- gGGCcACcUGugC-UUCGCGgGUGGCCa -3'
miRNA:   3'- -UUGuUGuACugGaAAGCGCgCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 23502 0.66 0.676413
Target:  5'- cACGAUggGAUCUUUCucuGCGCcUGGCCc -3'
miRNA:   3'- uUGUUGuaCUGGAAAG---CGCGcGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.