Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30567 | 3' | -53.7 | NC_006548.1 | + | 24339 | 0.68 | 0.573184 |
Target: 5'- cAGCGACAUGAuuuacuCCUUggcgGCG-GUGGCCg -3' miRNA: 3'- -UUGUUGUACU------GGAAag--CGCgCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 24450 | 0.78 | 0.12951 |
Target: 5'- uGCAAUAUGGCCgcUUGCaGCGCGGCa -3' miRNA: 3'- uUGUUGUACUGGaaAGCG-CGCGCCGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 29890 | 0.68 | 0.573183 |
Target: 5'- cGCuGCAUGACUgguccggCGCuGUGCGGCa -3' miRNA: 3'- uUGuUGUACUGGaaa----GCG-CGCGCCGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 30672 | 0.66 | 0.669552 |
Target: 5'- gGACAGgGUGGCaggaugaagccCGCGC-CGGCCg -3' miRNA: 3'- -UUGUUgUACUGgaaa-------GCGCGcGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 32566 | 0.66 | 0.699149 |
Target: 5'- cACcGCGUGGCCgUUUGCGC-CGGaCUg -3' miRNA: 3'- uUGuUGUACUGGaAAGCGCGcGCC-GG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 32897 | 0.66 | 0.651194 |
Target: 5'- -cCAGCGgguaucgcacucGACCgUUUGUGCGCcGGCCg -3' miRNA: 3'- uuGUUGUa-----------CUGGaAAGCGCGCG-CCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 33128 | 0.71 | 0.374915 |
Target: 5'- cGACAACAuaccggggcUGGCCggugcUCGgGCaGCGGCCc -3' miRNA: 3'- -UUGUUGU---------ACUGGaa---AGCgCG-CGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 33853 | 1.1 | 0.000638 |
Target: 5'- cAACAACAUGACCUUUCGCGCGCGGCCg -3' miRNA: 3'- -UUGUUGUACUGGAAAGCGCGCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 35855 | 0.66 | 0.650045 |
Target: 5'- -cCGGCGUGcccgugcgaagaauGCCgg-CGCgauccGCGCGGCCg -3' miRNA: 3'- uuGUUGUAC--------------UGGaaaGCG-----CGCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 36031 | 0.67 | 0.607486 |
Target: 5'- -cCGACGUcGACaCguugcagUCGCGCGCcGCCa -3' miRNA: 3'- uuGUUGUA-CUG-Gaa-----AGCGCGCGcCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 36813 | 0.66 | 0.699149 |
Target: 5'- --aGGCGcGGCCUUaUGCGCcUGGCCg -3' miRNA: 3'- uugUUGUaCUGGAAaGCGCGcGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 38407 | 0.66 | 0.699149 |
Target: 5'- cGCAAUaaAUGacgcgcccuaGCCgUUUCGUGUGCGGCa -3' miRNA: 3'- uUGUUG--UAC----------UGG-AAAGCGCGCGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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