Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30567 | 3' | -53.7 | NC_006548.1 | + | 38407 | 0.66 | 0.699149 |
Target: 5'- cGCAAUaaAUGacgcgcccuaGCCgUUUCGUGUGCGGCa -3' miRNA: 3'- uUGUUG--UAC----------UGG-AAAGCGCGCGCCGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 24339 | 0.68 | 0.573184 |
Target: 5'- cAGCGACAUGAuuuacuCCUUggcgGCG-GUGGCCg -3' miRNA: 3'- -UUGUUGUACU------GGAAag--CGCgCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 13189 | 0.68 | 0.573184 |
Target: 5'- uGCAGCAguugcuccucGGCCUgguuggCGCGCGCGaCCu -3' miRNA: 3'- uUGUUGUa---------CUGGAaa----GCGCGCGCcGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 2001 | 0.68 | 0.539355 |
Target: 5'- uGCcGCG-GGCaag-CGCGCGCGGCUg -3' miRNA: 3'- uUGuUGUaCUGgaaaGCGCGCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 8719 | 0.69 | 0.50623 |
Target: 5'- --aGACAaGACCUUggaCGCGCuGCGGgCg -3' miRNA: 3'- uugUUGUaCUGGAAa--GCGCG-CGCCgG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 20768 | 0.69 | 0.484636 |
Target: 5'- gGGCcACcUGugC-UUCGCGgGUGGCCa -3' miRNA: 3'- -UUGuUGuACugGaAAGCGCgCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 4971 | 0.69 | 0.483568 |
Target: 5'- -cCAugAUGGCUgcggUUGCGCcacuggaGCGGCCg -3' miRNA: 3'- uuGUugUACUGGaa--AGCGCG-------CGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 14715 | 0.69 | 0.483568 |
Target: 5'- gAGCAGC---GCCUggCGCGCGCguuccucGGCCu -3' miRNA: 3'- -UUGUUGuacUGGAaaGCGCGCG-------CCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 7675 | 0.7 | 0.453104 |
Target: 5'- uGACGGCc-GACCa---GCGCGCGGCa -3' miRNA: 3'- -UUGUUGuaCUGGaaagCGCGCGCCGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 2940 | 0.71 | 0.374916 |
Target: 5'- cGACAACAUcGCCUUcgacgaGCGCcugcagGCGGCCa -3' miRNA: 3'- -UUGUUGUAcUGGAAag----CGCG------CGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 13073 | 0.72 | 0.314396 |
Target: 5'- cGCAGCGUcACCc-UCG-GCGCGGCCg -3' miRNA: 3'- uUGUUGUAcUGGaaAGCgCGCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 5853 | 0.66 | 0.699149 |
Target: 5'- cGACGACAcccaacUGcccACCUUUaugcCGCGaCGCGGCa -3' miRNA: 3'- -UUGUUGU------AC---UGGAAA----GCGC-GCGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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