miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30567 3' -53.7 NC_006548.1 + 20768 0.69 0.484636
Target:  5'- gGGCcACcUGugC-UUCGCGgGUGGCCa -3'
miRNA:   3'- -UUGuUGuACugGaAAGCGCgCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 14715 0.69 0.483568
Target:  5'- gAGCAGC---GCCUggCGCGCGCguuccucGGCCu -3'
miRNA:   3'- -UUGUUGuacUGGAaaGCGCGCG-------CCGG- -5'
30567 3' -53.7 NC_006548.1 + 4971 0.69 0.483568
Target:  5'- -cCAugAUGGCUgcggUUGCGCcacuggaGCGGCCg -3'
miRNA:   3'- uuGUugUACUGGaa--AGCGCG-------CGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 7675 0.7 0.453104
Target:  5'- uGACGGCc-GACCa---GCGCGCGGCa -3'
miRNA:   3'- -UUGUUGuaCUGGaaagCGCGCGCCGg -5'
30567 3' -53.7 NC_006548.1 + 4102 0.7 0.442842
Target:  5'- uGCAAgGUGACCcuccCGCGgGUGGUCu -3'
miRNA:   3'- uUGUUgUACUGGaaa-GCGCgCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 2940 0.71 0.374916
Target:  5'- cGACAACAUcGCCUUcgacgaGCGCcugcagGCGGCCa -3'
miRNA:   3'- -UUGUUGUAcUGGAAag----CGCG------CGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 33128 0.71 0.374915
Target:  5'- cGACAACAuaccggggcUGGCCggugcUCGgGCaGCGGCCc -3'
miRNA:   3'- -UUGUUGU---------ACUGGaa---AGCgCG-CGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 11805 0.72 0.348041
Target:  5'- -----gGUGACCUUggGCGCGgUGGCCg -3'
miRNA:   3'- uuguugUACUGGAAagCGCGC-GCCGG- -5'
30567 3' -53.7 NC_006548.1 + 5851 0.72 0.348041
Target:  5'- gAACGGCcuUGGCCU--UGCGCGCaGCCu -3'
miRNA:   3'- -UUGUUGu-ACUGGAaaGCGCGCGcCGG- -5'
30567 3' -53.7 NC_006548.1 + 13073 0.72 0.314396
Target:  5'- cGCAGCGUcACCc-UCG-GCGCGGCCg -3'
miRNA:   3'- uUGUUGUAcUGGaaAGCgCGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 24450 0.78 0.12951
Target:  5'- uGCAAUAUGGCCgcUUGCaGCGCGGCa -3'
miRNA:   3'- uUGUUGUACUGGaaAGCG-CGCGCCGg -5'
30567 3' -53.7 NC_006548.1 + 33853 1.1 0.000638
Target:  5'- cAACAACAUGACCUUUCGCGCGCGGCCg -3'
miRNA:   3'- -UUGUUGUACUGGAAAGCGCGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.