Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30567 | 5' | -62.6 | NC_006548.1 | + | 37333 | 0.68 | 0.188121 |
Target: 5'- aGG--GGCGCGUcGCCacgcugccgacuagcGGCCAGGCCGa -3' miRNA: 3'- aCCugCCGCGUAcUGG---------------CCGGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 32392 | 0.68 | 0.201483 |
Target: 5'- -cGAUGGCaucaGCcUGGCCGGCCAG-CCGu -3' miRNA: 3'- acCUGCCG----CGuACUGGCCGGUCcGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 20079 | 0.67 | 0.234883 |
Target: 5'- aGGcCGGCGCAuugagcuuggggUGGCCGaugacgaGCgGGGCCu -3' miRNA: 3'- aCCuGCCGCGU------------ACUGGC-------CGgUCCGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 12405 | 0.67 | 0.212317 |
Target: 5'- cUGGuuGGUGCcgagggcGGCCGGauaCAGGCCGg -3' miRNA: 3'- -ACCugCCGCGua-----CUGGCCg--GUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 984 | 0.67 | 0.206298 |
Target: 5'- gGGuCGGCGCggGAucucaacCUGcGCCAGGCUg -3' miRNA: 3'- aCCuGCCGCGuaCU-------GGC-CGGUCCGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 29882 | 0.67 | 0.206839 |
Target: 5'- uUGGGCuGCGCugcAUGACUGGuCCGGcGCUg -3' miRNA: 3'- -ACCUGcCGCG---UACUGGCC-GGUC-CGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 5567 | 0.67 | 0.217919 |
Target: 5'- --uAC-GCGCA-GGCCaGGCCGGGCCGg -3' miRNA: 3'- accUGcCGCGUaCUGG-CCGGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 27351 | 0.66 | 0.247849 |
Target: 5'- aGGAgCGGCaguugaccgaGCAUuuCCGGgCGGGCCGu -3' miRNA: 3'- aCCU-GCCG----------CGUAcuGGCCgGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 36874 | 0.66 | 0.247849 |
Target: 5'- cGGccaGGCGCAUaaGGCCGcGCCuGGCg- -3' miRNA: 3'- aCCug-CCGCGUA--CUGGC-CGGuCCGgu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 15978 | 0.66 | 0.263387 |
Target: 5'- cGGACcuugugguccuccauGGCGCcgcgGAUUGGgUAGGCCAg -3' miRNA: 3'- aCCUG---------------CCGCGua--CUGGCCgGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 28607 | 0.66 | 0.267393 |
Target: 5'- cGGGuaGCGCcgcGACCuGGCCGGcGCCGa -3' miRNA: 3'- aCCUgcCGCGua-CUGG-CCGGUC-CGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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