miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30567 5' -62.6 NC_006548.1 + 33891 1.08 0.00013
Target:  5'- aUGGACGGCGCAUGACCGGCCAGGCCAg -3'
miRNA:   3'- -ACCUGCCGCGUACUGGCCGGUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 27351 0.66 0.247849
Target:  5'- aGGAgCGGCaguugaccgaGCAUuuCCGGgCGGGCCGu -3'
miRNA:   3'- aCCU-GCCG----------CGUAcuGGCCgGUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 5567 0.67 0.217919
Target:  5'- --uAC-GCGCA-GGCCaGGCCGGGCCGg -3'
miRNA:   3'- accUGcCGCGUaCUGG-CCGGUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 29882 0.67 0.206839
Target:  5'- uUGGGCuGCGCugcAUGACUGGuCCGGcGCUg -3'
miRNA:   3'- -ACCUGcCGCG---UACUGGCC-GGUC-CGGu -5'
30567 5' -62.6 NC_006548.1 + 32392 0.68 0.201483
Target:  5'- -cGAUGGCaucaGCcUGGCCGGCCAG-CCGu -3'
miRNA:   3'- acCUGCCG----CGuACUGGCCGGUCcGGU- -5'
30567 5' -62.6 NC_006548.1 + 6862 0.68 0.201483
Target:  5'- cGGAUGcaggcuGCGCAguucggUGACCGGCUccGGcGCCAa -3'
miRNA:   3'- aCCUGC------CGCGU------ACUGGCCGG--UC-CGGU- -5'
30567 5' -62.6 NC_006548.1 + 37333 0.68 0.188121
Target:  5'- aGG--GGCGCGUcGCCacgcugccgacuagcGGCCAGGCCGa -3'
miRNA:   3'- aCCugCCGCGUAcUGG---------------CCGGUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 36894 0.68 0.186136
Target:  5'- -cGugGGCGCAccgcaACCGGCugcugCAGGCCGu -3'
miRNA:   3'- acCugCCGCGUac---UGGCCG-----GUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 32768 0.71 0.120615
Target:  5'- cGGAUcugGGCGCu--GCCGGUguGGCCGg -3'
miRNA:   3'- aCCUG---CCGCGuacUGGCCGguCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 21190 0.72 0.096553
Target:  5'- cGGACGGC-C-UGGCCGcCCAGGCUg -3'
miRNA:   3'- aCCUGCCGcGuACUGGCcGGUCCGGu -5'
30567 5' -62.6 NC_006548.1 + 14302 0.74 0.065003
Target:  5'- cGGACcugcaGGCGCAguucCCGaGCCAGGCCGa -3'
miRNA:   3'- aCCUG-----CCGCGUacu-GGC-CGGUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 32969 0.74 0.0614
Target:  5'- cGGugcaGCGGCGC-UGGCCGGCC-GGCUc -3'
miRNA:   3'- aCC----UGCCGCGuACUGGCCGGuCCGGu -5'
30567 5' -62.6 NC_006548.1 + 10903 0.76 0.044788
Target:  5'- cGGAgGGCGCAaauucgcaUGACCGacGCaCAGGCCAu -3'
miRNA:   3'- aCCUgCCGCGU--------ACUGGC--CG-GUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 20401 0.7 0.134643
Target:  5'- -aGGCGGCGCAgGAucUCGGUCAGaGCCGu -3'
miRNA:   3'- acCUGCCGCGUaCU--GGCCGGUC-CGGU- -5'
30567 5' -62.6 NC_006548.1 + 21255 0.7 0.134643
Target:  5'- ---cCGGCaGCcUGGgCGGCCAGGCCGu -3'
miRNA:   3'- accuGCCG-CGuACUgGCCGGUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 2310 0.71 0.104992
Target:  5'- cGcGGCGGCGCcggagcUGACCGGCUAcGCCu -3'
miRNA:   3'- aC-CUGCCGCGu-----ACUGGCCGGUcCGGu -5'
30567 5' -62.6 NC_006548.1 + 30405 0.72 0.102105
Target:  5'- -aGAUGGCGUcgGuGCCGcCCAGGCCAg -3'
miRNA:   3'- acCUGCCGCGuaC-UGGCcGGUCCGGU- -5'
30567 5' -62.6 NC_006548.1 + 20851 0.72 0.088757
Target:  5'- cUGGcGCGGCaGCAggcGGCCGGCCuugaccAGGCCu -3'
miRNA:   3'- -ACC-UGCCG-CGUa--CUGGCCGG------UCCGGu -5'
30567 5' -62.6 NC_006548.1 + 32465 0.75 0.054763
Target:  5'- -cGGCGGCGaCGgcuGCCGGCCAGGCUg -3'
miRNA:   3'- acCUGCCGC-GUac-UGGCCGGUCCGGu -5'
30567 5' -62.6 NC_006548.1 + 28607 0.66 0.267393
Target:  5'- cGGGuaGCGCcgcGACCuGGCCGGcGCCGa -3'
miRNA:   3'- aCCUgcCGCGua-CUGG-CCGGUC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.