miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30568 3' -54.2 NC_006548.1 + 12587 0.66 0.647409
Target:  5'- gGCcagCUG-GucGGCGCCGGAuGCCGAGg -3'
miRNA:   3'- -UGaa-GACgCuuUCGCGGCUU-CGGCUU- -5'
30568 3' -54.2 NC_006548.1 + 16692 0.66 0.647409
Target:  5'- -----aGCGGAAGCGCCGAcgguuGCgGAc -3'
miRNA:   3'- ugaagaCGCUUUCGCGGCUu----CGgCUu -5'
30568 3' -54.2 NC_006548.1 + 16244 0.66 0.635829
Target:  5'- -----cGCGcAccGCGCCGAAGCCGu- -3'
miRNA:   3'- ugaagaCGC-UuuCGCGGCUUCGGCuu -5'
30568 3' -54.2 NC_006548.1 + 20583 0.66 0.612668
Target:  5'- uGCUUCcGCGucAGCGgCaGAGGCUGAc -3'
miRNA:   3'- -UGAAGaCGCuuUCGCgG-CUUCGGCUu -5'
30568 3' -54.2 NC_006548.1 + 6945 0.66 0.612668
Target:  5'- -----aGCuauuGGCGCCGGAGCCGGu -3'
miRNA:   3'- ugaagaCGcuu-UCGCGGCUUCGGCUu -5'
30568 3' -54.2 NC_006548.1 + 22779 0.66 0.60111
Target:  5'- cGCcUUUGCGGAu-CGCCGAcgaGGCCGGg -3'
miRNA:   3'- -UGaAGACGCUUucGCGGCU---UCGGCUu -5'
30568 3' -54.2 NC_006548.1 + 9113 0.66 0.60111
Target:  5'- gGCUUCUggaGCGccguccaauGAAGCGCCGGAaCUGGAa -3'
miRNA:   3'- -UGAAGA---CGC---------UUUCGCGGCUUcGGCUU- -5'
30568 3' -54.2 NC_006548.1 + 4967 0.68 0.499549
Target:  5'- gAUggCUGCGGuuGCGCCacugGAgcGGCCGAAa -3'
miRNA:   3'- -UGaaGACGCUuuCGCGG----CU--UCGGCUU- -5'
30568 3' -54.2 NC_006548.1 + 13370 0.68 0.499549
Target:  5'- cGCUcCUGCGGcgggcaaaccGGCGCCGAGGgCGGu -3'
miRNA:   3'- -UGAaGACGCUu---------UCGCGGCUUCgGCUu -5'
30568 3' -54.2 NC_006548.1 + 36813 0.69 0.467323
Target:  5'- gGCUcUCUGCGAgcGuCGCCG-AGCUGGu -3'
miRNA:   3'- -UGA-AGACGCUuuC-GCGGCuUCGGCUu -5'
30568 3' -54.2 NC_006548.1 + 17451 0.7 0.387112
Target:  5'- aGCagCgGCGAuGGCGCCGcagcuGGCCGAAg -3'
miRNA:   3'- -UGaaGaCGCUuUCGCGGCu----UCGGCUU- -5'
30568 3' -54.2 NC_006548.1 + 2315 0.75 0.188763
Target:  5'- gGCUgc-GCGgcGGCGCCGGAGCUGAc -3'
miRNA:   3'- -UGAagaCGCuuUCGCGGCUUCGGCUu -5'
30568 3' -54.2 NC_006548.1 + 20368 0.83 0.047952
Target:  5'- gACUUCUucgucgagcGCGAAGGCGCCGAacgGGCCGAc -3'
miRNA:   3'- -UGAAGA---------CGCUUUCGCGGCU---UCGGCUu -5'
30568 3' -54.2 NC_006548.1 + 34614 1.06 0.001087
Target:  5'- uACUUCUGCGAAAGCGCCGAAGCCGAAa -3'
miRNA:   3'- -UGAAGACGCUUUCGCGGCUUCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.