miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30569 3' -59.3 NC_006548.1 + 7312 0.66 0.42106
Target:  5'- --aGCGCC-GGUCAGgggcaGCGCACGg- -3'
miRNA:   3'- ggaCGCGGaCCAGUCgg---UGCGUGCac -5'
30569 3' -59.3 NC_006548.1 + 6455 0.66 0.384272
Target:  5'- aCCcGCGCCg---C-GCCugGCGCGUGc -3'
miRNA:   3'- -GGaCGCGGaccaGuCGGugCGUGCAC- -5'
30569 3' -59.3 NC_006548.1 + 23487 0.66 0.384272
Target:  5'- cUCUGCGCCUGGccccaaCGGuCCugGUGCa-- -3'
miRNA:   3'- -GGACGCGGACCa-----GUC-GGugCGUGcac -5'
30569 3' -59.3 NC_006548.1 + 3590 0.66 0.375414
Target:  5'- gCCUGaCGCaaCUGGU--GCCGgGCugGUGg -3'
miRNA:   3'- -GGAC-GCG--GACCAguCGGUgCGugCAC- -5'
30569 3' -59.3 NC_006548.1 + 18338 0.67 0.366694
Target:  5'- aCCU-CGCCccgguaGGUCAGCCGuCGCAUcUGg -3'
miRNA:   3'- -GGAcGCGGa-----CCAGUCGGU-GCGUGcAC- -5'
30569 3' -59.3 NC_006548.1 + 11766 0.67 0.358115
Target:  5'- aCCaGCGUccagCUGGUCAugcGCgGCGCGCGg- -3'
miRNA:   3'- -GGaCGCG----GACCAGU---CGgUGCGUGCac -5'
30569 3' -59.3 NC_006548.1 + 31644 0.68 0.317359
Target:  5'- aUUGCGCCUGGaUGGCCugGaugGCGg- -3'
miRNA:   3'- gGACGCGGACCaGUCGGugCg--UGCac -5'
30569 3' -59.3 NC_006548.1 + 32963 0.68 0.309639
Target:  5'- --cGCGCCcGGUgCAGCgGCGCugGc- -3'
miRNA:   3'- ggaCGCGGaCCA-GUCGgUGCGugCac -5'
30569 3' -59.3 NC_006548.1 + 21256 0.68 0.280194
Target:  5'- aCCgGCaGCCUGGgCGGCCAgGC-CGUc -3'
miRNA:   3'- -GGaCG-CGGACCaGUCGGUgCGuGCAc -5'
30569 3' -59.3 NC_006548.1 + 33956 0.69 0.27319
Target:  5'- aCUG-GCCUGGcCGGUCAUGCGcCGUc -3'
miRNA:   3'- gGACgCGGACCaGUCGGUGCGU-GCAc -5'
30569 3' -59.3 NC_006548.1 + 16481 0.69 0.253019
Target:  5'- gCUGCGgcagagcaCCUGGagcagCAGCUGCaGCGCGUGg -3'
miRNA:   3'- gGACGC--------GGACCa----GUCGGUG-CGUGCAC- -5'
30569 3' -59.3 NC_006548.1 + 22198 0.7 0.234089
Target:  5'- --cGCGCCUGGg-GGCCGCaCGCGUc -3'
miRNA:   3'- ggaCGCGGACCagUCGGUGcGUGCAc -5'
30569 3' -59.3 NC_006548.1 + 13192 0.72 0.171826
Target:  5'- aCCUGCagcaguugcuccucgGCCUGGUUGG-CGCGCGCGa- -3'
miRNA:   3'- -GGACG---------------CGGACCAGUCgGUGCGUGCac -5'
30569 3' -59.3 NC_006548.1 + 1917 0.73 0.12903
Target:  5'- gCCUgGUGCCcgauccccUGGUgCAGCCGCGCGCGc- -3'
miRNA:   3'- -GGA-CGCGG--------ACCA-GUCGGUGCGUGCac -5'
30569 3' -59.3 NC_006548.1 + 32001 0.76 0.079742
Target:  5'- aCCaGCGCgCUGGUCGGCUAUGCAUuccggGUGg -3'
miRNA:   3'- -GGaCGCG-GACCAGUCGGUGCGUG-----CAC- -5'
30569 3' -59.3 NC_006548.1 + 34968 1.09 0.000259
Target:  5'- cCCUGCGCCUGGUCAGCCACGCACGUGc -3'
miRNA:   3'- -GGACGCGGACCAGUCGGUGCGUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.