miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30569 5' -55.6 NC_006548.1 + 23086 0.68 0.416866
Target:  5'- gAGCg--GGaGCGGCCGUAGU--GGcCGUg -3'
miRNA:   3'- -UCGuuaCC-CGCCGGCAUCGuuUC-GCG- -5'
30569 5' -55.6 NC_006548.1 + 27212 0.67 0.50976
Target:  5'- cAGCAGgcGGCGaCCG-AGCAAcGCGCu -3'
miRNA:   3'- -UCGUUacCCGCcGGCaUCGUUuCGCG- -5'
30569 5' -55.6 NC_006548.1 + 27368 0.66 0.564975
Target:  5'- gAGCAuuuccGGGCgGGCCGUguugaGGcCAAugccuaugccAGCGCg -3'
miRNA:   3'- -UCGUua---CCCG-CCGGCA-----UC-GUU----------UCGCG- -5'
30569 5' -55.6 NC_006548.1 + 27854 0.68 0.453857
Target:  5'- cGCAGUG-GUGGCCGaGGCGAcgccuucgaagaucGuGCGCa -3'
miRNA:   3'- uCGUUACcCGCCGGCaUCGUU--------------U-CGCG- -5'
30569 5' -55.6 NC_006548.1 + 30418 0.66 0.531607
Target:  5'- cGCcuGAUGGGCGGCaCGgcGUucaaugcuGGGGCGa -3'
miRNA:   3'- uCG--UUACCCGCCG-GCauCG--------UUUCGCg -5'
30569 5' -55.6 NC_006548.1 + 32752 0.67 0.498978
Target:  5'- uGCAGgcugGGGCGGgCGgaucuGGGCGCu -3'
miRNA:   3'- uCGUUa---CCCGCCgGCaucguUUCGCG- -5'
30569 5' -55.6 NC_006548.1 + 32808 0.68 0.456934
Target:  5'- uGGCAAgcgucaccGCGGCCGgcGCAcaaacggucGAGUGCg -3'
miRNA:   3'- -UCGUUacc-----CGCCGGCauCGU---------UUCGCG- -5'
30569 5' -55.6 NC_006548.1 + 33054 0.66 0.58413
Target:  5'- uGCgAAUGGGguacaagcgggagcCGGCCGgccAGCGccgcugcaccGGGCGCg -3'
miRNA:   3'- uCG-UUACCC--------------GCCGGCa--UCGU----------UUCGCG- -5'
30569 5' -55.6 NC_006548.1 + 33588 0.66 0.553783
Target:  5'- cGCGcUGGGCaccguuguccGGCCG-AGCGAcGuCGCa -3'
miRNA:   3'- uCGUuACCCG----------CCGGCaUCGUUuC-GCG- -5'
30569 5' -55.6 NC_006548.1 + 33869 0.66 0.576225
Target:  5'- cGCGc---GCGGCCGgugAGCGAcgauggacGGCGCa -3'
miRNA:   3'- uCGUuaccCGCCGGCa--UCGUU--------UCGCG- -5'
30569 5' -55.6 NC_006548.1 + 35002 1.12 0.000272
Target:  5'- gAGCAAUGGGCGGCCGUAGCAAAGCGCa -3'
miRNA:   3'- -UCGUUACCCGCCGGCAUCGUUUCGCG- -5'
30569 5' -55.6 NC_006548.1 + 35269 0.73 0.202641
Target:  5'- cGGCGaugGUGGGCGGCC-UGGUAccuGCGUu -3'
miRNA:   3'- -UCGU---UACCCGCCGGcAUCGUuu-CGCG- -5'
30569 5' -55.6 NC_006548.1 + 35502 0.71 0.279976
Target:  5'- cGCGAcuGG-GGCCGUGGCAAGGauCGCg -3'
miRNA:   3'- uCGUUacCCgCCGGCAUCGUUUC--GCG- -5'
30569 5' -55.6 NC_006548.1 + 35941 0.7 0.352185
Target:  5'- cGGCGAguUGGcCGGCaggGUGGCGgcGCGCg -3'
miRNA:   3'- -UCGUU--ACCcGCCGg--CAUCGUuuCGCG- -5'
30569 5' -55.6 NC_006548.1 + 38276 0.66 0.587525
Target:  5'- gAGC---GGGUGGCCGaUGGCGAcauAGuCGUc -3'
miRNA:   3'- -UCGuuaCCCGCCGGC-AUCGUU---UC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.