miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30570 5' -52.3 NC_006548.1 + 17555 0.65 0.802482
Target:  5'- gUUGGGucguccaguugcCGACGAcAGGCuGCAUCGCu -3'
miRNA:   3'- gAGCCCua----------GCUGCU-UCUGuCGUAGUG- -5'
30570 5' -52.3 NC_006548.1 + 8782 0.66 0.754517
Target:  5'- gUCGGGAugUCGAUGAggagcuuuccguGGGCGGCcgC-Ca -3'
miRNA:   3'- gAGCCCU--AGCUGCU------------UCUGUCGuaGuG- -5'
30570 5' -52.3 NC_006548.1 + 22360 0.67 0.731583
Target:  5'- uUCGG-AUCGGCGAucgaaccGGACAcGCgAUCACc -3'
miRNA:   3'- gAGCCcUAGCUGCU-------UCUGU-CG-UAGUG- -5'
30570 5' -52.3 NC_006548.1 + 30689 0.69 0.618979
Target:  5'- -aCGGGAacugCGACGGcGGACAGgGUgGCa -3'
miRNA:   3'- gaGCCCUa---GCUGCU-UCUGUCgUAgUG- -5'
30570 5' -52.3 NC_006548.1 + 5535 0.69 0.573183
Target:  5'- gCUCGaGcGGUCGACcuGAGcccGGCGGCGUCGCu -3'
miRNA:   3'- -GAGC-C-CUAGCUG--CUU---CUGUCGUAGUG- -5'
30570 5' -52.3 NC_006548.1 + 21569 0.71 0.506229
Target:  5'- uUCGGGAUCGAUGGGaaauGguGCAUUGCu -3'
miRNA:   3'- gAGCCCUAGCUGCUUc---UguCGUAGUG- -5'
30570 5' -52.3 NC_006548.1 + 27632 0.72 0.453103
Target:  5'- -aCGGGGUCGGCGgcGAaGGCGagGCa -3'
miRNA:   3'- gaGCCCUAGCUGCuuCUgUCGUagUG- -5'
30570 5' -52.3 NC_006548.1 + 35181 0.72 0.432714
Target:  5'- uUCGGGGgagacaaGGcCGAGGGCGGCAUCGu -3'
miRNA:   3'- gAGCCCUag-----CU-GCUUCUGUCGUAGUg -5'
30570 5' -52.3 NC_006548.1 + 30810 0.79 0.154087
Target:  5'- -gCGGGAUCG-CGGAGAUAGCAgcugCGCu -3'
miRNA:   3'- gaGCCCUAGCuGCUUCUGUCGUa---GUG- -5'
30570 5' -52.3 NC_006548.1 + 35765 1.11 0.000989
Target:  5'- gCUCGGGAUCGACGAAGACAGCAUCACa -3'
miRNA:   3'- -GAGCCCUAGCUGCUUCUGUCGUAGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.