miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30572 3' -54.1 NC_006548.1 + 36361 1.14 0.000386
Target:  5'- gCCGUCCGGCCUGCAGAUGAACUACGCg -3'
miRNA:   3'- -GGCAGGCCGGACGUCUACUUGAUGCG- -5'
30572 3' -54.1 NC_006548.1 + 17692 0.75 0.25182
Target:  5'- aCGUCCGGCC---AGGUGAGCUGCc- -3'
miRNA:   3'- gGCAGGCCGGacgUCUACUUGAUGcg -5'
30572 3' -54.1 NC_006548.1 + 2421 0.74 0.279615
Target:  5'- aCCG-CCGGCCUgGCGGGUGcGCcuCGCu -3'
miRNA:   3'- -GGCaGGCCGGA-CGUCUACuUGauGCG- -5'
30572 3' -54.1 NC_006548.1 + 12153 0.73 0.309795
Target:  5'- aCCG-CCGGCCaGCAGcagGAGCaucaGCGCa -3'
miRNA:   3'- -GGCaGGCCGGaCGUCua-CUUGa---UGCG- -5'
30572 3' -54.1 NC_006548.1 + 24719 0.73 0.334017
Target:  5'- aCGUCCGGCCUGauc--GAACUGCu- -3'
miRNA:   3'- gGCAGGCCGGACgucuaCUUGAUGcg -5'
30572 3' -54.1 NC_006548.1 + 14380 0.72 0.350921
Target:  5'- gCCGgcUUCGGCCUgGCucggGAACUGCGCc -3'
miRNA:   3'- -GGC--AGGCCGGA-CGucuaCUUGAUGCG- -5'
30572 3' -54.1 NC_006548.1 + 16972 0.72 0.350921
Target:  5'- cCCG-CCGGCaUGCAGGcgGAGCUGCu- -3'
miRNA:   3'- -GGCaGGCCGgACGUCUa-CUUGAUGcg -5'
30572 3' -54.1 NC_006548.1 + 30295 0.72 0.356979
Target:  5'- gCGUCCGGCacgGCuauagccguacgccAGGUGAcuCUGCGCg -3'
miRNA:   3'- gGCAGGCCGga-CG--------------UCUACUu-GAUGCG- -5'
30572 3' -54.1 NC_006548.1 + 12995 0.72 0.359597
Target:  5'- aCCGUggguacgccaCCGGCCgcGCcgaGGGUGAcGCUGCGCu -3'
miRNA:   3'- -GGCA----------GGCCGGa-CG---UCUACU-UGAUGCG- -5'
30572 3' -54.1 NC_006548.1 + 23960 0.71 0.395777
Target:  5'- aCCGcCCGGCCUgGCAGGc--GCU-CGCg -3'
miRNA:   3'- -GGCaGGCCGGA-CGUCUacuUGAuGCG- -5'
30572 3' -54.1 NC_006548.1 + 34723 0.7 0.444169
Target:  5'- gCCGUCCucGGUCUGCGGAaGAuCUucggaagucaGCGCc -3'
miRNA:   3'- -GGCAGG--CCGGACGUCUaCUuGA----------UGCG- -5'
30572 3' -54.1 NC_006548.1 + 28081 0.7 0.461365
Target:  5'- gCUGg-CGGCCUGCAGGccGAACUcaaccgccugcagaACGCa -3'
miRNA:   3'- -GGCagGCCGGACGUCUa-CUUGA--------------UGCG- -5'
30572 3' -54.1 NC_006548.1 + 37776 0.7 0.474749
Target:  5'- gCCGgucgCCGGCaCUGU-GAUGAGCguguucgAUGCa -3'
miRNA:   3'- -GGCa---GGCCG-GACGuCUACUUGa------UGCG- -5'
30572 3' -54.1 NC_006548.1 + 23179 0.69 0.495709
Target:  5'- aCGUUCGGCCagcuccgGCAGcGUGAugUACa- -3'
miRNA:   3'- gGCAGGCCGGa------CGUC-UACUugAUGcg -5'
30572 3' -54.1 NC_006548.1 + 17584 0.69 0.5279
Target:  5'- gCUG-CUuGCCUGCucGAUGAGCgUGCGCa -3'
miRNA:   3'- -GGCaGGcCGGACGu-CUACUUG-AUGCG- -5'
30572 3' -54.1 NC_006548.1 + 33874 0.69 0.538806
Target:  5'- gCGgCCGGUgaGCGacGAUGGACgGCGCa -3'
miRNA:   3'- gGCaGGCCGgaCGU--CUACUUGaUGCG- -5'
30572 3' -54.1 NC_006548.1 + 33295 0.69 0.538806
Target:  5'- aCC-UCCGGCCgcgaggaGCAuGcgGcGCUGCGCa -3'
miRNA:   3'- -GGcAGGCCGGa------CGU-CuaCuUGAUGCG- -5'
30572 3' -54.1 NC_006548.1 + 31882 0.68 0.549787
Target:  5'- cCUGauUUCGGUCUGUgccGGAUGGACUuccuCGCg -3'
miRNA:   3'- -GGC--AGGCCGGACG---UCUACUUGAu---GCG- -5'
30572 3' -54.1 NC_006548.1 + 35729 0.68 0.560837
Target:  5'- -aGUCCGGUCgaGCGGGaaagGAACUgagugGCGCc -3'
miRNA:   3'- ggCAGGCCGGa-CGUCUa---CUUGA-----UGCG- -5'
30572 3' -54.1 NC_006548.1 + 19954 0.68 0.560837
Target:  5'- aCGUgCCGGCCgGCGGG-GAGgaUugGCa -3'
miRNA:   3'- gGCA-GGCCGGaCGUCUaCUUg-AugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.