Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30573 | 3' | -59.1 | NC_006548.1 | + | 779 | 0.66 | 0.424343 |
Target: 5'- -uGUUCGGCGugGCcaaggUCGCAuGGcugaagaAGCCa -3' miRNA: 3'- guCGAGCCGCugCG-----AGCGUcUC-------UCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 13434 | 0.66 | 0.415822 |
Target: 5'- aUAGCUCGGCGucaGaaccgGCGGcGGGCCa -3' miRNA: 3'- -GUCGAGCCGCug-Cgag--CGUCuCUCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 24804 | 0.66 | 0.415822 |
Target: 5'- aCGGCUgggucuugcCGGUGACGUUCaGCAGuucgaucaGGCCg -3' miRNA: 3'- -GUCGA---------GCCGCUGCGAG-CGUCuc------UCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 842 | 0.66 | 0.415822 |
Target: 5'- gCGGCUugcCGGCGGCucGCUUGCu--GGGCUg -3' miRNA: 3'- -GUCGA---GCCGCUG--CGAGCGucuCUCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 2253 | 0.66 | 0.415822 |
Target: 5'- uCAGCUcCGGCGcCGC-CGCGc--AGCCg -3' miRNA: 3'- -GUCGA-GCCGCuGCGaGCGUcucUCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 36182 | 0.66 | 0.406479 |
Target: 5'- gCAGC-CGG-GACGUcCGCAGuccAGCCg -3' miRNA: 3'- -GUCGaGCCgCUGCGaGCGUCuc-UCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 4289 | 0.66 | 0.406479 |
Target: 5'- cCAGCUcCGGCGucaGCacggUGCAGAGcGGCa -3' miRNA: 3'- -GUCGA-GCCGCug-CGa---GCGUCUC-UCGg -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 18777 | 0.66 | 0.388196 |
Target: 5'- gCGGCUgGGCGAgGaUCuGCGGcAGGGUCg -3' miRNA: 3'- -GUCGAgCCGCUgCgAG-CGUC-UCUCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 19691 | 0.66 | 0.388196 |
Target: 5'- gGGCcuuUCaGGCG-CGUUCGCGGAGcGCg -3' miRNA: 3'- gUCG---AG-CCGCuGCGAGCGUCUCuCGg -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 27389 | 0.67 | 0.379258 |
Target: 5'- -uGCUCGGCcaGGCGa--GCgAGAGAGCg -3' miRNA: 3'- guCGAGCCG--CUGCgagCG-UCUCUCGg -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 24526 | 0.67 | 0.379258 |
Target: 5'- -cGCUgUGGCGAUcuggGcCUCGCAGAucGAGCUg -3' miRNA: 3'- guCGA-GCCGCUG----C-GAGCGUCU--CUCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 12658 | 0.68 | 0.320655 |
Target: 5'- gCAGUggGGCGACgGCgugUGCGGAGAGa- -3' miRNA: 3'- -GUCGagCCGCUG-CGa--GCGUCUCUCgg -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 420 | 0.68 | 0.320655 |
Target: 5'- uCAGUUCGGCca-GCUCGCu--GAGCa -3' miRNA: 3'- -GUCGAGCCGcugCGAGCGucuCUCGg -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 27846 | 0.68 | 0.315959 |
Target: 5'- uGGCcgaGGCGACGCcuucgaagaucgugCGCAGGGAacuGCCc -3' miRNA: 3'- gUCGag-CCGCUGCGa-------------GCGUCUCU---CGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 13387 | 0.68 | 0.312858 |
Target: 5'- cCGGCggaaUCGGCGcGCGCUCcuGCGGcGGGCa -3' miRNA: 3'- -GUCG----AGCCGC-UGCGAG--CGUCuCUCGg -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 23761 | 0.68 | 0.296214 |
Target: 5'- aAGUUCGGCGGCGC-CGCccacgugcuuGAGCa -3' miRNA: 3'- gUCGAGCCGCUGCGaGCGucu-------CUCGg -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 23965 | 0.68 | 0.290334 |
Target: 5'- cCGGCcUGGCaGGCGCUCGC-GAcuGCCa -3' miRNA: 3'- -GUCGaGCCG-CUGCGAGCGuCUcuCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 27000 | 0.68 | 0.290334 |
Target: 5'- gCAGCgUCGGCGAgucCGCcgaUCaGCAGAcGGCCc -3' miRNA: 3'- -GUCG-AGCCGCU---GCG---AG-CGUCUcUCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 18444 | 0.69 | 0.283114 |
Target: 5'- uGGCagCGGCGugGUcuUCuGCAGGGcGCCc -3' miRNA: 3'- gUCGa-GCCGCugCG--AG-CGUCUCuCGG- -5' |
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30573 | 3' | -59.1 | NC_006548.1 | + | 12111 | 0.69 | 0.276036 |
Target: 5'- -uGCUCGGCGccggacguucACGCUgGUGGuGAGaCCa -3' miRNA: 3'- guCGAGCCGC----------UGCGAgCGUCuCUC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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