miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30573 3' -59.1 NC_006548.1 + 779 0.66 0.424343
Target:  5'- -uGUUCGGCGugGCcaaggUCGCAuGGcugaagaAGCCa -3'
miRNA:   3'- guCGAGCCGCugCG-----AGCGUcUC-------UCGG- -5'
30573 3' -59.1 NC_006548.1 + 2253 0.66 0.415822
Target:  5'- uCAGCUcCGGCGcCGC-CGCGc--AGCCg -3'
miRNA:   3'- -GUCGA-GCCGCuGCGaGCGUcucUCGG- -5'
30573 3' -59.1 NC_006548.1 + 842 0.66 0.415822
Target:  5'- gCGGCUugcCGGCGGCucGCUUGCu--GGGCUg -3'
miRNA:   3'- -GUCGA---GCCGCUG--CGAGCGucuCUCGG- -5'
30573 3' -59.1 NC_006548.1 + 13434 0.66 0.415822
Target:  5'- aUAGCUCGGCGucaGaaccgGCGGcGGGCCa -3'
miRNA:   3'- -GUCGAGCCGCug-Cgag--CGUCuCUCGG- -5'
30573 3' -59.1 NC_006548.1 + 24804 0.66 0.415822
Target:  5'- aCGGCUgggucuugcCGGUGACGUUCaGCAGuucgaucaGGCCg -3'
miRNA:   3'- -GUCGA---------GCCGCUGCGAG-CGUCuc------UCGG- -5'
30573 3' -59.1 NC_006548.1 + 36182 0.66 0.406479
Target:  5'- gCAGC-CGG-GACGUcCGCAGuccAGCCg -3'
miRNA:   3'- -GUCGaGCCgCUGCGaGCGUCuc-UCGG- -5'
30573 3' -59.1 NC_006548.1 + 4289 0.66 0.406479
Target:  5'- cCAGCUcCGGCGucaGCacggUGCAGAGcGGCa -3'
miRNA:   3'- -GUCGA-GCCGCug-CGa---GCGUCUC-UCGg -5'
30573 3' -59.1 NC_006548.1 + 18777 0.66 0.388196
Target:  5'- gCGGCUgGGCGAgGaUCuGCGGcAGGGUCg -3'
miRNA:   3'- -GUCGAgCCGCUgCgAG-CGUC-UCUCGG- -5'
30573 3' -59.1 NC_006548.1 + 19691 0.66 0.388196
Target:  5'- gGGCcuuUCaGGCG-CGUUCGCGGAGcGCg -3'
miRNA:   3'- gUCG---AG-CCGCuGCGAGCGUCUCuCGg -5'
30573 3' -59.1 NC_006548.1 + 24526 0.67 0.379258
Target:  5'- -cGCUgUGGCGAUcuggGcCUCGCAGAucGAGCUg -3'
miRNA:   3'- guCGA-GCCGCUG----C-GAGCGUCU--CUCGG- -5'
30573 3' -59.1 NC_006548.1 + 27389 0.67 0.379258
Target:  5'- -uGCUCGGCcaGGCGa--GCgAGAGAGCg -3'
miRNA:   3'- guCGAGCCG--CUGCgagCG-UCUCUCGg -5'
30573 3' -59.1 NC_006548.1 + 420 0.68 0.320655
Target:  5'- uCAGUUCGGCca-GCUCGCu--GAGCa -3'
miRNA:   3'- -GUCGAGCCGcugCGAGCGucuCUCGg -5'
30573 3' -59.1 NC_006548.1 + 12658 0.68 0.320655
Target:  5'- gCAGUggGGCGACgGCgugUGCGGAGAGa- -3'
miRNA:   3'- -GUCGagCCGCUG-CGa--GCGUCUCUCgg -5'
30573 3' -59.1 NC_006548.1 + 27846 0.68 0.315959
Target:  5'- uGGCcgaGGCGACGCcuucgaagaucgugCGCAGGGAacuGCCc -3'
miRNA:   3'- gUCGag-CCGCUGCGa-------------GCGUCUCU---CGG- -5'
30573 3' -59.1 NC_006548.1 + 13387 0.68 0.312858
Target:  5'- cCGGCggaaUCGGCGcGCGCUCcuGCGGcGGGCa -3'
miRNA:   3'- -GUCG----AGCCGC-UGCGAG--CGUCuCUCGg -5'
30573 3' -59.1 NC_006548.1 + 23761 0.68 0.296214
Target:  5'- aAGUUCGGCGGCGC-CGCccacgugcuuGAGCa -3'
miRNA:   3'- gUCGAGCCGCUGCGaGCGucu-------CUCGg -5'
30573 3' -59.1 NC_006548.1 + 23965 0.68 0.290334
Target:  5'- cCGGCcUGGCaGGCGCUCGC-GAcuGCCa -3'
miRNA:   3'- -GUCGaGCCG-CUGCGAGCGuCUcuCGG- -5'
30573 3' -59.1 NC_006548.1 + 27000 0.68 0.290334
Target:  5'- gCAGCgUCGGCGAgucCGCcgaUCaGCAGAcGGCCc -3'
miRNA:   3'- -GUCG-AGCCGCU---GCG---AG-CGUCUcUCGG- -5'
30573 3' -59.1 NC_006548.1 + 18444 0.69 0.283114
Target:  5'- uGGCagCGGCGugGUcuUCuGCAGGGcGCCc -3'
miRNA:   3'- gUCGa-GCCGCugCG--AG-CGUCUCuCGG- -5'
30573 3' -59.1 NC_006548.1 + 12111 0.69 0.276036
Target:  5'- -uGCUCGGCGccggacguucACGCUgGUGGuGAGaCCa -3'
miRNA:   3'- guCGAGCCGC----------UGCGAgCGUCuCUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.