Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 853 | 0.67 | 0.676509 |
Target: 5'- gCGGCUCGCuUGCuGGgcuGUGGuuGCCAGCccagGCg -3' miRNA: 3'- aGCUGAGCG-ACG-CU---UACU--UGGUCG----CG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 7430 | 0.67 | 0.662833 |
Target: 5'- gUCGaACUCGUUGCGuaccuccuccaggAGUGAuuccaggugaacgAUCAGUGCa -3' miRNA: 3'- -AGC-UGAGCGACGC-------------UUACU-------------UGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 37692 | 0.67 | 0.661691 |
Target: 5'- aUCGACgUCGCUGCaucGAacacgcucaucacaGUGccggcGACCGGCGUc -3' miRNA: 3'- -AGCUG-AGCGACG---CU--------------UAC-----UUGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 32662 | 0.68 | 0.607881 |
Target: 5'- aCGGCgaUCGCUGCGccUGucaccCCGGCGUu -3' miRNA: 3'- aGCUG--AGCGACGCuuACuu---GGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 36814 | 0.69 | 0.58507 |
Target: 5'- -aGGCUCuCUGCGAGcgucgccGAGCUGGUGCg -3' miRNA: 3'- agCUGAGcGACGCUUa------CUUGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 3686 | 0.69 | 0.58507 |
Target: 5'- aUGACgcugagCGCcgagGCG-GUGAACUGGCGCu -3' miRNA: 3'- aGCUGa-----GCGa---CGCuUACUUGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 12931 | 0.69 | 0.573723 |
Target: 5'- cUGGCUCGCgcugaGCGcGGUGcuGugCGGCGCa -3' miRNA: 3'- aGCUGAGCGa----CGC-UUAC--UugGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 31842 | 0.69 | 0.551194 |
Target: 5'- uUCaACUCGUUgGCGGAcGcaucuACCAGCGCa -3' miRNA: 3'- -AGcUGAGCGA-CGCUUaCu----UGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 22318 | 0.69 | 0.54003 |
Target: 5'- cCGAacaUCGguCUGCGcGGUG-GCCAGCGCg -3' miRNA: 3'- aGCUg--AGC--GACGC-UUACuUGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 29884 | 0.7 | 0.496219 |
Target: 5'- -gGGCUgCGCUGCauGAcUGGuCCGGCGCu -3' miRNA: 3'- agCUGA-GCGACG--CUuACUuGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 1681 | 0.7 | 0.496219 |
Target: 5'- gCGAgCUUGCUgGCGAuccaGAugCAGCGUa -3' miRNA: 3'- aGCU-GAGCGA-CGCUua--CUugGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 13156 | 0.7 | 0.496219 |
Target: 5'- gCGACcUGCUGCuuguacUGGACCAGgGCg -3' miRNA: 3'- aGCUGaGCGACGcuu---ACUUGGUCgCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 30859 | 0.7 | 0.495144 |
Target: 5'- -aGAUUCGUuggcugacccaccUGCGAcaGUGAaaccgaGCCAGCGCc -3' miRNA: 3'- agCUGAGCG-------------ACGCU--UACU------UGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 16752 | 0.7 | 0.489783 |
Target: 5'- aCGGCUCccccucgaacauguuGUUGgGggUGAGCaGGCGCa -3' miRNA: 3'- aGCUGAG---------------CGACgCuuACUUGgUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 35855 | 0.71 | 0.47492 |
Target: 5'- cCGGCgUGCccgUGCGAAgaauGCCGGCGCg -3' miRNA: 3'- aGCUGaGCG---ACGCUUacu-UGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 33879 | 0.71 | 0.433758 |
Target: 5'- cUCGAUUCGCUGUu-GUGuagguCCAGCGg -3' miRNA: 3'- -AGCUGAGCGACGcuUACuu---GGUCGCg -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 1165 | 0.72 | 0.423795 |
Target: 5'- -aGGCUCGCUcGCGAAUuGGGCguCAGCGa -3' miRNA: 3'- agCUGAGCGA-CGCUUA-CUUG--GUCGCg -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 5148 | 0.73 | 0.358075 |
Target: 5'- aCGGCUuucuUGCggugGUGggUGAGuCCGGCGCc -3' miRNA: 3'- aGCUGA----GCGa---CGCuuACUU-GGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 13379 | 0.74 | 0.292138 |
Target: 5'- aUCGGCgcgCGCuccUGCGGcgGGcaaACCGGCGCc -3' miRNA: 3'- -AGCUGa--GCG---ACGCUuaCU---UGGUCGCG- -5' |
|||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 9420 | 0.75 | 0.269263 |
Target: 5'- gCGACUCagGCUGUGuuUGAAcagccguCCAGCGCu -3' miRNA: 3'- aGCUGAG--CGACGCuuACUU-------GGUCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home