miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30574 3' -61.7 NC_006548.1 + 17758 0.68 0.182095
Target:  5'- cGCCGUAugCGGC-GCgGguGGCCa-- -3'
miRNA:   3'- -UGGCGUugGCCGaCGaCguCCGGcua -5'
30574 3' -61.7 NC_006548.1 + 36589 0.68 0.181602
Target:  5'- cGCCGCGGCCGGCaccgcggUGCUcgcGCGGGgaugcgUCGAUa -3'
miRNA:   3'- -UGGCGUUGGCCG-------ACGA---CGUCC------GGCUA- -5'
30574 3' -61.7 NC_006548.1 + 36240 0.69 0.150311
Target:  5'- gACUGCGGacgucCCGGCUGCcgGCAGuCCGAa -3'
miRNA:   3'- -UGGCGUU-----GGCCGACGa-CGUCcGGCUa -5'
30574 3' -61.7 NC_006548.1 + 16390 0.69 0.150311
Target:  5'- uGCCGCca-CGGC-GCUGCAGGaUCGAa -3'
miRNA:   3'- -UGGCGuugGCCGaCGACGUCC-GGCUa -5'
30574 3' -61.7 NC_006548.1 + 32467 0.7 0.134494
Target:  5'- aACgGCGGCgaCGGCUGCcgGcCAGGCUGAUg -3'
miRNA:   3'- -UGgCGUUG--GCCGACGa-C-GUCCGGCUA- -5'
30574 3' -61.7 NC_006548.1 + 20897 0.71 0.107368
Target:  5'- aGCCgGCGGCCGaGgUGCUGCGcagcuugcuGGCCGAa -3'
miRNA:   3'- -UGG-CGUUGGC-CgACGACGU---------CCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 28128 0.72 0.08793
Target:  5'- gGCCGcCAGCCGcCUGCUGUgAGGCUGGa -3'
miRNA:   3'- -UGGC-GUUGGCcGACGACG-UCCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 27146 0.73 0.085442
Target:  5'- cGCUGCGuACUGGCUGCcGCagcauccuGGGCCGAUu -3'
miRNA:   3'- -UGGCGU-UGGCCGACGaCG--------UCCGGCUA- -5'
30574 3' -61.7 NC_006548.1 + 3585 0.73 0.083022
Target:  5'- -aCGCAACUGGUgccggGCUGguGGCCGu- -3'
miRNA:   3'- ugGCGUUGGCCGa----CGACguCCGGCua -5'
30574 3' -61.7 NC_006548.1 + 20581 0.75 0.05373
Target:  5'- aGCgGCGGCagaGGCUGCUGCGGcGUCGAc -3'
miRNA:   3'- -UGgCGUUGg--CCGACGACGUC-CGGCUa -5'
30574 3' -61.7 NC_006548.1 + 28073 0.76 0.043766
Target:  5'- aGCagGCGGCUGGCgGcCUGCAGGCCGAa -3'
miRNA:   3'- -UGg-CGUUGGCCGaC-GACGUCCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 36902 1 0.000609
Target:  5'- cACCGCAACCGGCUGCUGCAGGCCGu- -3'
miRNA:   3'- -UGGCGUUGGCCGACGACGUCCGGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.