miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30574 5' -52.2 NC_006548.1 + 14987 0.66 0.791916
Target:  5'- gGACUCGgcagCagUGCGcucaccGGCAGCAUAg-GCg -3'
miRNA:   3'- aCUGAGCa---G--ACGC------UCGUCGUAUagCG- -5'
30574 5' -52.2 NC_006548.1 + 27073 0.66 0.781539
Target:  5'- gGGC-CGUCUGCuGAuCGGCGgacUCGCc -3'
miRNA:   3'- aCUGaGCAGACG-CUcGUCGUau-AGCG- -5'
30574 5' -52.2 NC_006548.1 + 29896 0.66 0.781539
Target:  5'- aUGACUgGUCcgGCGcuguGCGGCA---CGCg -3'
miRNA:   3'- -ACUGAgCAGa-CGCu---CGUCGUauaGCG- -5'
30574 5' -52.2 NC_006548.1 + 38266 0.66 0.770991
Target:  5'- -cGCUCuGUCUgaGCGGGUGGCcgAUgGCg -3'
miRNA:   3'- acUGAG-CAGA--CGCUCGUCGuaUAgCG- -5'
30574 5' -52.2 NC_006548.1 + 37306 0.66 0.760283
Target:  5'- aUGACUU-UCUGa-GGCAGCcgGUCGUc -3'
miRNA:   3'- -ACUGAGcAGACgcUCGUCGuaUAGCG- -5'
30574 5' -52.2 NC_006548.1 + 36787 0.67 0.727343
Target:  5'- cGACUCG-CUGCGAaugaacCAGCGccaggCGCg -3'
miRNA:   3'- aCUGAGCaGACGCUc-----GUCGUaua--GCG- -5'
30574 5' -52.2 NC_006548.1 + 1126 0.67 0.693454
Target:  5'- cUGGC-CGUCUGCGcGGCcAGCAa--CGCc -3'
miRNA:   3'- -ACUGaGCAGACGC-UCG-UCGUauaGCG- -5'
30574 5' -52.2 NC_006548.1 + 36814 0.68 0.670512
Target:  5'- aGGCUC-UCUGCGAGCGucGCcgAgcuggUGCg -3'
miRNA:   3'- aCUGAGcAGACGCUCGU--CGuaUa----GCG- -5'
30574 5' -52.2 NC_006548.1 + 34378 0.68 0.647409
Target:  5'- cGcCUgGUCcuUGUGGGCGGCAccUCGCu -3'
miRNA:   3'- aCuGAgCAG--ACGCUCGUCGUauAGCG- -5'
30574 5' -52.2 NC_006548.1 + 30858 0.68 0.647409
Target:  5'- cGGC-CGUUaUGCGGGCAGCAgugaaGCc -3'
miRNA:   3'- aCUGaGCAG-ACGCUCGUCGUauag-CG- -5'
30574 5' -52.2 NC_006548.1 + 24624 0.68 0.63467
Target:  5'- gGACUucaccggucaccgUGUCgGCGGGCAGCucgAUCuGCg -3'
miRNA:   3'- aCUGA-------------GCAGaCGCUCGUCGua-UAG-CG- -5'
30574 5' -52.2 NC_006548.1 + 36935 1.12 0.000722
Target:  5'- uUGACUCGUCUGCGAGCAGCAUAUCGCu -3'
miRNA:   3'- -ACUGAGCAGACGCUCGUCGUAUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.