miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30575 5' -50.5 NC_006548.1 + 36631 0.66 0.889024
Target:  5'- ---gCGGCGUUGaucGCGUCG-ACGCGg -3'
miRNA:   3'- cauaGCUGCAGCga-CGUAGCuUGUGC- -5'
30575 5' -50.5 NC_006548.1 + 33663 0.66 0.881186
Target:  5'- cGUG-CGACGUCGCUcgGC--CGGACAaCGg -3'
miRNA:   3'- -CAUaGCUGCAGCGA--CGuaGCUUGU-GC- -5'
30575 5' -50.5 NC_006548.1 + 720 0.66 0.881186
Target:  5'- ---gCGGCGUUGCa-CGUCGAGCAgGa -3'
miRNA:   3'- cauaGCUGCAGCGacGUAGCUUGUgC- -5'
30575 5' -50.5 NC_006548.1 + 9043 0.66 0.864662
Target:  5'- -cAUUGAgG--GCUGCGUgGAGCACGg -3'
miRNA:   3'- caUAGCUgCagCGACGUAgCUUGUGC- -5'
30575 5' -50.5 NC_006548.1 + 33021 0.66 0.864662
Target:  5'- -----aGCGcCGCUGCAcCGGGCGCGc -3'
miRNA:   3'- cauagcUGCaGCGACGUaGCUUGUGC- -5'
30575 5' -50.5 NC_006548.1 + 37717 0.66 0.864662
Target:  5'- -aGUCGACGaccUCG--GUAUCGAACACu -3'
miRNA:   3'- caUAGCUGC---AGCgaCGUAGCUUGUGc -5'
30575 5' -50.5 NC_006548.1 + 32470 0.66 0.855993
Target:  5'- cGUGUCGACGgauggacCGCcgGUAgUGGACGCGc -3'
miRNA:   3'- -CAUAGCUGCa------GCGa-CGUaGCUUGUGC- -5'
30575 5' -50.5 NC_006548.1 + 2145 0.67 0.835081
Target:  5'- -gGUCGACcaguUCGCggGCGUCGAcgacaacaucgccgACGCGa -3'
miRNA:   3'- caUAGCUGc---AGCGa-CGUAGCU--------------UGUGC- -5'
30575 5' -50.5 NC_006548.1 + 15754 0.69 0.745851
Target:  5'- --cUCGACGUgGC-GCGUauaGAGCACa -3'
miRNA:   3'- cauAGCUGCAgCGaCGUAg--CUUGUGc -5'
30575 5' -50.5 NC_006548.1 + 35980 0.69 0.716911
Target:  5'- cGUGUCGACGUCGgCUauccGCAagcuccaggugcggcUCGAucgGCGCGc -3'
miRNA:   3'- -CAUAGCUGCAGC-GA----CGU---------------AGCU---UGUGC- -5'
30575 5' -50.5 NC_006548.1 + 12162 0.69 0.712397
Target:  5'- aGUAUCGccGCGU-GCUGguUCGAGCGgCGc -3'
miRNA:   3'- -CAUAGC--UGCAgCGACguAGCUUGU-GC- -5'
30575 5' -50.5 NC_006548.1 + 33558 0.7 0.678152
Target:  5'- -cGUCGACGUCGagcgcuugGCgAUCGAcaGCGCGc -3'
miRNA:   3'- caUAGCUGCAGCga------CG-UAGCU--UGUGC- -5'
30575 5' -50.5 NC_006548.1 + 9567 0.7 0.643469
Target:  5'- gGUAUCGccaGgggCGCacgcgaucagUGCAUCGAGCGCGg -3'
miRNA:   3'- -CAUAGCug-Ca--GCG----------ACGUAGCUUGUGC- -5'
30575 5' -50.5 NC_006548.1 + 33602 0.71 0.585582
Target:  5'- -cGUCGACGuucagcUCGCUGaCGUCGAggAUGCGg -3'
miRNA:   3'- caUAGCUGC------AGCGAC-GUAGCU--UGUGC- -5'
30575 5' -50.5 NC_006548.1 + 37689 1.08 0.002416
Target:  5'- uGUAUCGACGUCGCUGCAUCGAACACGc -3'
miRNA:   3'- -CAUAGCUGCAGCGACGUAGCUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.