miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30576 3' -54.5 NC_006548.1 + 6504 0.66 0.597115
Target:  5'- --gGCGgcgCGGGUuacgGGCUCGGUCGAa-- -3'
miRNA:   3'- uuaCGUa--GCUCG----UCGAGCCGGCUaag -5'
30576 3' -54.5 NC_006548.1 + 12063 0.66 0.597115
Target:  5'- --gGCGcCGAGCAuGCUgGGUCGGUg- -3'
miRNA:   3'- uuaCGUaGCUCGU-CGAgCCGGCUAag -5'
30576 3' -54.5 NC_006548.1 + 14251 0.66 0.585582
Target:  5'- ---aCAUCGAGgGGCgccUGGCCGAUg- -3'
miRNA:   3'- uuacGUAGCUCgUCGa--GCCGGCUAag -5'
30576 3' -54.5 NC_006548.1 + 9591 0.66 0.574093
Target:  5'- cAGUGCAUCGAGC-GCggCGcGCCaGGUg- -3'
miRNA:   3'- -UUACGUAGCUCGuCGa-GC-CGG-CUAag -5'
30576 3' -54.5 NC_006548.1 + 14399 0.66 0.562656
Target:  5'- -cUGCAcggcUGGGCAGCUCG-CCGGcUUCg -3'
miRNA:   3'- uuACGUa---GCUCGUCGAGCcGGCU-AAG- -5'
30576 3' -54.5 NC_006548.1 + 383 0.67 0.506575
Target:  5'- -uUGCAUCG-GC-GCUgGGCCGGc-- -3'
miRNA:   3'- uuACGUAGCuCGuCGAgCCGGCUaag -5'
30576 3' -54.5 NC_006548.1 + 10588 0.67 0.506575
Target:  5'- ---uCGUCGGGUgauGCUCGGCCuGUUCu -3'
miRNA:   3'- uuacGUAGCUCGu--CGAGCCGGcUAAG- -5'
30576 3' -54.5 NC_006548.1 + 1051 0.68 0.484803
Target:  5'- --cGC-UCGucAGCAGCUCGGCCu---- -3'
miRNA:   3'- uuaCGuAGC--UCGUCGAGCCGGcuaag -5'
30576 3' -54.5 NC_006548.1 + 20072 0.68 0.474085
Target:  5'- --cGCAUUGAGCuuGGggUGGCCGAUg- -3'
miRNA:   3'- uuaCGUAGCUCG--UCgaGCCGGCUAag -5'
30576 3' -54.5 NC_006548.1 + 9205 0.68 0.4499
Target:  5'- uGAUGCGUCGAuGC-GCUCGGCguuuguggcucuugCGcgUCg -3'
miRNA:   3'- -UUACGUAGCU-CGuCGAGCCG--------------GCuaAG- -5'
30576 3' -54.5 NC_006548.1 + 31174 0.68 0.442674
Target:  5'- --cGCGUCcacgcaGAGUcGCUCGGCUGggUCa -3'
miRNA:   3'- uuaCGUAG------CUCGuCGAGCCGGCuaAG- -5'
30576 3' -54.5 NC_006548.1 + 3445 0.68 0.441647
Target:  5'- uGUGCGagGAGCAGCgccgUGGCCuucaccaGGUUCu -3'
miRNA:   3'- uUACGUagCUCGUCGa---GCCGG-------CUAAG- -5'
30576 3' -54.5 NC_006548.1 + 27752 0.69 0.432467
Target:  5'- --gGUGUUGAGCAGCUCcaGGCCaagccGUUCg -3'
miRNA:   3'- uuaCGUAGCUCGUCGAG--CCGGc----UAAG- -5'
30576 3' -54.5 NC_006548.1 + 23076 0.69 0.412471
Target:  5'- gGGUGCAaUCGAGCGGgagCGGCCGu--- -3'
miRNA:   3'- -UUACGU-AGCUCGUCga-GCCGGCuaag -5'
30576 3' -54.5 NC_006548.1 + 33496 0.69 0.393057
Target:  5'- --cGCAUUGAGCuGUUCGGCgGGc-- -3'
miRNA:   3'- uuaCGUAGCUCGuCGAGCCGgCUaag -5'
30576 3' -54.5 NC_006548.1 + 22690 0.71 0.305291
Target:  5'- --gGCgAUCGAGCAGCUCGucGCUGccAUUCa -3'
miRNA:   3'- uuaCG-UAGCUCGUCGAGC--CGGC--UAAG- -5'
30576 3' -54.5 NC_006548.1 + 33668 0.72 0.282067
Target:  5'- aGAUGCGUgCGAcGUcGCUCGGCCGGa-- -3'
miRNA:   3'- -UUACGUA-GCU-CGuCGAGCCGGCUaag -5'
30576 3' -54.5 NC_006548.1 + 23254 0.73 0.246508
Target:  5'- --gGCAUCGAGCAGUUCGcuGUCGAc-- -3'
miRNA:   3'- uuaCGUAGCUCGUCGAGC--CGGCUaag -5'
30576 3' -54.5 NC_006548.1 + 18797 0.75 0.181326
Target:  5'- --gGCGUCGAGCAGCaCGGCCu---- -3'
miRNA:   3'- uuaCGUAGCUCGUCGaGCCGGcuaag -5'
30576 3' -54.5 NC_006548.1 + 38213 1.07 0.000753
Target:  5'- gAAUGCAUCGAGCAGCUCGGCCGAUUCu -3'
miRNA:   3'- -UUACGUAGCUCGUCGAGCCGGCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.