Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 12063 | 0.66 | 0.597115 |
Target: 5'- --gGCGcCGAGCAuGCUgGGUCGGUg- -3' miRNA: 3'- uuaCGUaGCUCGU-CGAgCCGGCUAag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 6504 | 0.66 | 0.597115 |
Target: 5'- --gGCGgcgCGGGUuacgGGCUCGGUCGAa-- -3' miRNA: 3'- uuaCGUa--GCUCG----UCGAGCCGGCUaag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 14251 | 0.66 | 0.585582 |
Target: 5'- ---aCAUCGAGgGGCgccUGGCCGAUg- -3' miRNA: 3'- uuacGUAGCUCgUCGa--GCCGGCUAag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 9591 | 0.66 | 0.574093 |
Target: 5'- cAGUGCAUCGAGC-GCggCGcGCCaGGUg- -3' miRNA: 3'- -UUACGUAGCUCGuCGa-GC-CGG-CUAag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 14399 | 0.66 | 0.562656 |
Target: 5'- -cUGCAcggcUGGGCAGCUCG-CCGGcUUCg -3' miRNA: 3'- uuACGUa---GCUCGUCGAGCcGGCU-AAG- -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 10588 | 0.67 | 0.506575 |
Target: 5'- ---uCGUCGGGUgauGCUCGGCCuGUUCu -3' miRNA: 3'- uuacGUAGCUCGu--CGAGCCGGcUAAG- -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 383 | 0.67 | 0.506575 |
Target: 5'- -uUGCAUCG-GC-GCUgGGCCGGc-- -3' miRNA: 3'- uuACGUAGCuCGuCGAgCCGGCUaag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 1051 | 0.68 | 0.484803 |
Target: 5'- --cGC-UCGucAGCAGCUCGGCCu---- -3' miRNA: 3'- uuaCGuAGC--UCGUCGAGCCGGcuaag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 20072 | 0.68 | 0.474085 |
Target: 5'- --cGCAUUGAGCuuGGggUGGCCGAUg- -3' miRNA: 3'- uuaCGUAGCUCG--UCgaGCCGGCUAag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 9205 | 0.68 | 0.4499 |
Target: 5'- uGAUGCGUCGAuGC-GCUCGGCguuuguggcucuugCGcgUCg -3' miRNA: 3'- -UUACGUAGCU-CGuCGAGCCG--------------GCuaAG- -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 31174 | 0.68 | 0.442674 |
Target: 5'- --cGCGUCcacgcaGAGUcGCUCGGCUGggUCa -3' miRNA: 3'- uuaCGUAG------CUCGuCGAGCCGGCuaAG- -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 3445 | 0.68 | 0.441647 |
Target: 5'- uGUGCGagGAGCAGCgccgUGGCCuucaccaGGUUCu -3' miRNA: 3'- uUACGUagCUCGUCGa---GCCGG-------CUAAG- -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 27752 | 0.69 | 0.432467 |
Target: 5'- --gGUGUUGAGCAGCUCcaGGCCaagccGUUCg -3' miRNA: 3'- uuaCGUAGCUCGUCGAG--CCGGc----UAAG- -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 23076 | 0.69 | 0.412471 |
Target: 5'- gGGUGCAaUCGAGCGGgagCGGCCGu--- -3' miRNA: 3'- -UUACGU-AGCUCGUCga-GCCGGCuaag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 33496 | 0.69 | 0.393057 |
Target: 5'- --cGCAUUGAGCuGUUCGGCgGGc-- -3' miRNA: 3'- uuaCGUAGCUCGuCGAGCCGgCUaag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 22690 | 0.71 | 0.305291 |
Target: 5'- --gGCgAUCGAGCAGCUCGucGCUGccAUUCa -3' miRNA: 3'- uuaCG-UAGCUCGUCGAGC--CGGC--UAAG- -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 33668 | 0.72 | 0.282067 |
Target: 5'- aGAUGCGUgCGAcGUcGCUCGGCCGGa-- -3' miRNA: 3'- -UUACGUA-GCU-CGuCGAGCCGGCUaag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 23254 | 0.73 | 0.246508 |
Target: 5'- --gGCAUCGAGCAGUUCGcuGUCGAc-- -3' miRNA: 3'- uuaCGUAGCUCGUCGAGC--CGGCUaag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 18797 | 0.75 | 0.181326 |
Target: 5'- --gGCGUCGAGCAGCaCGGCCu---- -3' miRNA: 3'- uuaCGUAGCUCGUCGaGCCGGcuaag -5' |
|||||||
30576 | 3' | -54.5 | NC_006548.1 | + | 38213 | 1.07 | 0.000753 |
Target: 5'- gAAUGCAUCGAGCAGCUCGGCCGAUUCu -3' miRNA: 3'- -UUACGUAGCUCGUCGAGCCGGCUAAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home