miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30576 5' -57 NC_006548.1 + 22670 0.66 0.513997
Target:  5'- cGGCAguUCGGCGAGCgGaacgauagcGCCGUcCUGg -3'
miRNA:   3'- cCCGU--AGCCGUUCGaC---------UGGCGaGACa -5'
30576 5' -57 NC_006548.1 + 18530 0.66 0.513997
Target:  5'- cGGGUccauGUCGGCAcGCUGucACCGCa---- -3'
miRNA:   3'- -CCCG----UAGCCGUuCGAC--UGGCGagaca -5'
30576 5' -57 NC_006548.1 + 37544 0.66 0.513997
Target:  5'- cGGCGcCGGCGguugGGCUGAgUGgaCUGUg -3'
miRNA:   3'- cCCGUaGCCGU----UCGACUgGCgaGACA- -5'
30576 5' -57 NC_006548.1 + 3966 0.66 0.482268
Target:  5'- aGGGCuuccCGGCAGucCUGcUCGCUCUGg -3'
miRNA:   3'- -CCCGua--GCCGUUc-GACuGGCGAGACa -5'
30576 5' -57 NC_006548.1 + 23255 0.67 0.431624
Target:  5'- aGGCAUCGaGCAGuucGCUgucGACCGCUUg-- -3'
miRNA:   3'- cCCGUAGC-CGUU---CGA---CUGGCGAGaca -5'
30576 5' -57 NC_006548.1 + 22291 0.68 0.393428
Target:  5'- cGGGUGUCGGcCAGGC-GAUCGCg--GUa -3'
miRNA:   3'- -CCCGUAGCC-GUUCGaCUGGCGagaCA- -5'
30576 5' -57 NC_006548.1 + 23352 0.68 0.384227
Target:  5'- uGGGCAUC-----GCUGACCGCgCUGUu -3'
miRNA:   3'- -CCCGUAGccguuCGACUGGCGaGACA- -5'
30576 5' -57 NC_006548.1 + 26973 0.68 0.384227
Target:  5'- aGGC--CGaGCAAGCUGGCCGUaagCUGa -3'
miRNA:   3'- cCCGuaGC-CGUUCGACUGGCGa--GACa -5'
30576 5' -57 NC_006548.1 + 22565 0.68 0.384227
Target:  5'- uGGUG-CGGCAGGUgcaGCCGCUUUGUc -3'
miRNA:   3'- cCCGUaGCCGUUCGac-UGGCGAGACA- -5'
30576 5' -57 NC_006548.1 + 3654 0.68 0.37517
Target:  5'- gGGGCugaagccuuccuGUCGGaucugccGCUG-CCGCUCUGUc -3'
miRNA:   3'- -CCCG------------UAGCCguu----CGACuGGCGAGACA- -5'
30576 5' -57 NC_006548.1 + 20978 0.68 0.360982
Target:  5'- uGGGCAguUCGGCcagcAAGCUGcgcagcaccucggccGCCGgCUUUGUg -3'
miRNA:   3'- -CCCGU--AGCCG----UUCGAC---------------UGGC-GAGACA- -5'
30576 5' -57 NC_006548.1 + 33814 0.68 0.357494
Target:  5'- uGGcCAUCGGCGA-CcGACCGCUCg-- -3'
miRNA:   3'- cCC-GUAGCCGUUcGaCUGGCGAGaca -5'
30576 5' -57 NC_006548.1 + 29479 0.69 0.315909
Target:  5'- cGGCAacgUCGGCcagcgaucGCUGACCGC-CUGc -3'
miRNA:   3'- cCCGU---AGCCGuu------CGACUGGCGaGACa -5'
30576 5' -57 NC_006548.1 + 30575 0.7 0.301092
Target:  5'- aGGGCAUCGGCugguuccaugccagcAGUUGcacCCGCgggCUGUa -3'
miRNA:   3'- -CCCGUAGCCGu--------------UCGACu--GGCGa--GACA- -5'
30576 5' -57 NC_006548.1 + 20520 0.7 0.292761
Target:  5'- uGGGCAcUGGCAccguGGgUGACUGCUCg-- -3'
miRNA:   3'- -CCCGUaGCCGU----UCgACUGGCGAGaca -5'
30576 5' -57 NC_006548.1 + 1149 0.7 0.278079
Target:  5'- uGGGCGUCaGCGAuGCUGAgCUGCgccggCUGg -3'
miRNA:   3'- -CCCGUAGcCGUU-CGACU-GGCGa----GACa -5'
30576 5' -57 NC_006548.1 + 15809 0.7 0.27096
Target:  5'- uGGGUAUCGGCuGGGCgGACgaCGCUCa-- -3'
miRNA:   3'- -CCCGUAGCCG-UUCGaCUG--GCGAGaca -5'
30576 5' -57 NC_006548.1 + 15421 0.72 0.219213
Target:  5'- aGGGCAUCcuGCAGGgUGACCGUgugcaggCUGa -3'
miRNA:   3'- -CCCGUAGc-CGUUCgACUGGCGa------GACa -5'
30576 5' -57 NC_006548.1 + 4785 0.72 0.202094
Target:  5'- uGGCgAUCGGCAGGCUGugUGC-CUc- -3'
miRNA:   3'- cCCG-UAGCCGUUCGACugGCGaGAca -5'
30576 5' -57 NC_006548.1 + 18042 0.73 0.181084
Target:  5'- cGGuCAagGGCGAGC-GACCGUUCUGg -3'
miRNA:   3'- cCC-GUagCCGUUCGaCUGGCGAGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.