miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30578 3' -49.2 NC_006549.1 + 53502 0.66 0.998858
Target:  5'- ---gCAGACA-GACgACGGAa-AACCCu -3'
miRNA:   3'- guuaGUCUGUaCUG-UGCCUgcUUGGG- -5'
30578 3' -49.2 NC_006549.1 + 120668 0.66 0.998858
Target:  5'- gCAuUCGGcCAUGAUgcuaGCGGcaugcuucGCGGGCCCc -3'
miRNA:   3'- -GUuAGUCuGUACUG----UGCC--------UGCUUGGG- -5'
30578 3' -49.2 NC_006549.1 + 118457 0.66 0.998614
Target:  5'- aCAAUCcaugaAGACc-GACAUGGGCGGuACCa -3'
miRNA:   3'- -GUUAG-----UCUGuaCUGUGCCUGCU-UGGg -5'
30578 3' -49.2 NC_006549.1 + 48189 0.66 0.998327
Target:  5'- ----aAGACGcucaACGCGGACGGuaaACCCa -3'
miRNA:   3'- guuagUCUGUac--UGUGCCUGCU---UGGG- -5'
30578 3' -49.2 NC_006549.1 + 98917 0.66 0.998327
Target:  5'- uGGUCAGGCucuugGACGCGca-GGAUCCa -3'
miRNA:   3'- gUUAGUCUGua---CUGUGCcugCUUGGG- -5'
30578 3' -49.2 NC_006549.1 + 83309 0.67 0.996627
Target:  5'- -----uGACGUGG-ACGGccaGCGAACCCg -3'
miRNA:   3'- guuaguCUGUACUgUGCC---UGCUUGGG- -5'
30578 3' -49.2 NC_006549.1 + 12580 0.67 0.995967
Target:  5'- uCAAUCAaACGUcaucgccucgguaGACAUGGGCGAACa- -3'
miRNA:   3'- -GUUAGUcUGUA-------------CUGUGCCUGCUUGgg -5'
30578 3' -49.2 NC_006549.1 + 33299 0.67 0.994578
Target:  5'- aCGAgCAG-CGUGACgacgGCGGACGGAgUCg -3'
miRNA:   3'- -GUUaGUCuGUACUG----UGCCUGCUUgGG- -5'
30578 3' -49.2 NC_006549.1 + 7097 0.68 0.991623
Target:  5'- cCAGUCGGGCuccagGGgucCGCGGGucccacCGGACCCg -3'
miRNA:   3'- -GUUAGUCUGua---CU---GUGCCU------GCUUGGG- -5'
30578 3' -49.2 NC_006549.1 + 48140 0.68 0.991506
Target:  5'- ----gGGACAUGGCACugcccgaaagcugGGGCcGGCCCa -3'
miRNA:   3'- guuagUCUGUACUGUG-------------CCUGcUUGGG- -5'
30578 3' -49.2 NC_006549.1 + 96786 0.69 0.985849
Target:  5'- --cUCAGAgGUGuuACuCGGACGGagaACCCg -3'
miRNA:   3'- guuAGUCUgUAC--UGuGCCUGCU---UGGG- -5'
30578 3' -49.2 NC_006549.1 + 47527 0.7 0.974846
Target:  5'- aAAUCAGAUAUGGUACagguucGACGGACUCa -3'
miRNA:   3'- gUUAGUCUGUACUGUGc-----CUGCUUGGG- -5'
30578 3' -49.2 NC_006549.1 + 15373 0.71 0.947851
Target:  5'- uGAUCAGACAUGucggucugugcccucACGgccuguauagUGGACGAugCCa -3'
miRNA:   3'- gUUAGUCUGUAC---------------UGU----------GCCUGCUugGG- -5'
30578 3' -49.2 NC_006549.1 + 3967 1.13 0.007795
Target:  5'- cCAAUCAGACAUGACACGGACGAACCCu -3'
miRNA:   3'- -GUUAGUCUGUACUGUGCCUGCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.