miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30578 5' -56.9 NC_006549.1 + 135086 0.66 0.877233
Target:  5'- -gGAGCUCGCCUACg-CGcAGCUg-- -3'
miRNA:   3'- ggCUCGAGCGGAUGagGCaUCGGugc -5'
30578 5' -56.9 NC_006549.1 + 85078 0.66 0.862644
Target:  5'- gCCuAGCUCuGCCUACUCCGgcaa-ACGa -3'
miRNA:   3'- -GGcUCGAG-CGGAUGAGGCaucggUGC- -5'
30578 5' -56.9 NC_006549.1 + 18832 0.66 0.855042
Target:  5'- aCCGuAGUggacgCGUCaUGCaCCGUAGUCACGg -3'
miRNA:   3'- -GGC-UCGa----GCGG-AUGaGGCAUCGGUGC- -5'
30578 5' -56.9 NC_006549.1 + 134751 0.68 0.787708
Target:  5'- gCCGAGCggggugCGCCa--UCCGUaguuAGCCAUc -3'
miRNA:   3'- -GGCUCGa-----GCGGaugAGGCA----UCGGUGc -5'
30578 5' -56.9 NC_006549.1 + 106320 0.7 0.6617
Target:  5'- gCGAacGCgugaCGCCaGCUCCGUGGCCGu- -3'
miRNA:   3'- gGCU--CGa---GCGGaUGAGGCAUCGGUgc -5'
30578 5' -56.9 NC_006549.1 + 52627 0.74 0.455682
Target:  5'- -gGAGCUCGCCga-UCCGUccguGCCGCu -3'
miRNA:   3'- ggCUCGAGCGGaugAGGCAu---CGGUGc -5'
30578 5' -56.9 NC_006549.1 + 96703 0.76 0.361995
Target:  5'- uCCGAGCUCGUCU-CUCCcGUGuCCACa -3'
miRNA:   3'- -GGCUCGAGCGGAuGAGG-CAUcGGUGc -5'
30578 5' -56.9 NC_006549.1 + 3931 1.11 0.001733
Target:  5'- cCCGAGCUCGCCUACUCCGUAGCCACGg -3'
miRNA:   3'- -GGCUCGAGCGGAUGAGGCAUCGGUGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.