miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3058 5' -49.1 NC_001493.1 + 41451 0.66 0.997925
Target:  5'- uUCGAuGGcuuUCGCGcaacGCACGGGGCa -3'
miRNA:   3'- gAGCUuCC---AGUGUaaa-UGUGCCUCGa -5'
3058 5' -49.1 NC_001493.1 + 61448 0.66 0.997925
Target:  5'- uUCG-GGGUUACGg--GCuCGGGGCUu -3'
miRNA:   3'- gAGCuUCCAGUGUaaaUGuGCCUCGA- -5'
3058 5' -49.1 NC_001493.1 + 94525 0.66 0.997045
Target:  5'- -gUGGAGGUCACcaggaUACcCGGGGCc -3'
miRNA:   3'- gaGCUUCCAGUGuaa--AUGuGCCUCGa -5'
3058 5' -49.1 NC_001493.1 + 60469 0.67 0.995876
Target:  5'- uCUCGAcGGUCACAccucCGCGGAauaccGCg -3'
miRNA:   3'- -GAGCUuCCAGUGUaaauGUGCCU-----CGa -5'
3058 5' -49.1 NC_001493.1 + 114361 0.67 0.995876
Target:  5'- gUCGAccgGGGUCACcg--ACACGGuGGUUg -3'
miRNA:   3'- gAGCU---UCCAGUGuaaaUGUGCC-UCGA- -5'
3058 5' -49.1 NC_001493.1 + 21944 0.67 0.992407
Target:  5'- --aGAGGGUCAgGgcgcugGCGCGGAGaCUc -3'
miRNA:   3'- gagCUUCCAGUgUaaa---UGUGCCUC-GA- -5'
3058 5' -49.1 NC_001493.1 + 106728 0.69 0.981149
Target:  5'- uUCGAAGGggGCAUUcugugACGCGGGGg- -3'
miRNA:   3'- gAGCUUCCagUGUAAa----UGUGCCUCga -5'
3058 5' -49.1 NC_001493.1 + 46381 0.7 0.967525
Target:  5'- cCUCGGGcaccGG-CGCAUUgaacGCGCGGAGCc -3'
miRNA:   3'- -GAGCUU----CCaGUGUAAa---UGUGCCUCGa -5'
3058 5' -49.1 NC_001493.1 + 42248 0.7 0.96049
Target:  5'- gUCGAAGGUC-CGgagACACagGGGGCa -3'
miRNA:   3'- gAGCUUCCAGuGUaaaUGUG--CCUCGa -5'
3058 5' -49.1 NC_001493.1 + 30227 0.71 0.952467
Target:  5'- -cCGAGGGgcUCAUuccccugUACGCGGAGCg -3'
miRNA:   3'- gaGCUUCC--AGUGuaa----AUGUGCCUCGa -5'
3058 5' -49.1 NC_001493.1 + 112924 0.72 0.927858
Target:  5'- --aGAAGGUaCACGUguucgACGCGGGGUUg -3'
miRNA:   3'- gagCUUCCA-GUGUAaa---UGUGCCUCGA- -5'
3058 5' -49.1 NC_001493.1 + 29860 0.73 0.866923
Target:  5'- gCUCGAGaGUCGCGUU---GCGGAGCUc -3'
miRNA:   3'- -GAGCUUcCAGUGUAAaugUGCCUCGA- -5'
3058 5' -49.1 NC_001493.1 + 42120 1.08 0.013393
Target:  5'- gCUCGAAGGUCACAUUUACACGGAGCUc -3'
miRNA:   3'- -GAGCUUCCAGUGUAAAUGUGCCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.