miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30580 3' -56.8 NC_006549.1 + 68262 0.66 0.855873
Target:  5'- gCGug-UCgGGUCCGGUGGacGCCCUUAc -3'
miRNA:   3'- -GCuuaAGaUCGGGCCACC--CGGGAGUc -5'
30580 3' -56.8 NC_006549.1 + 41829 0.66 0.848
Target:  5'- cCGGGggCgccgGGCCCGaGaGGGCCCgCGGg -3'
miRNA:   3'- -GCUUaaGa---UCGGGC-CaCCCGGGaGUC- -5'
30580 3' -56.8 NC_006549.1 + 50910 0.66 0.848
Target:  5'- ----gUCUGGCCCaGGcguuccugUGGGUCCUCuGg -3'
miRNA:   3'- gcuuaAGAUCGGG-CC--------ACCCGGGAGuC- -5'
30580 3' -56.8 NC_006549.1 + 55976 0.66 0.839931
Target:  5'- aCGuAcgUC-AGCCCGGUGucuggcugcgcGGCCUUUAGg -3'
miRNA:   3'- -GC-UuaAGaUCGGGCCAC-----------CCGGGAGUC- -5'
30580 3' -56.8 NC_006549.1 + 101926 0.66 0.839931
Target:  5'- -----cCUGGagaCCCGG-GGGCCCUgCAGg -3'
miRNA:   3'- gcuuaaGAUC---GGGCCaCCCGGGA-GUC- -5'
30580 3' -56.8 NC_006549.1 + 50854 0.67 0.787817
Target:  5'- -------cGGaCCCaGGUGGGCCCUUGGg -3'
miRNA:   3'- gcuuaagaUC-GGG-CCACCCGGGAGUC- -5'
30580 3' -56.8 NC_006549.1 + 50376 0.68 0.740461
Target:  5'- ----aUCUGGCCCGGgaggacccucUGGGCCgUCc- -3'
miRNA:   3'- gcuuaAGAUCGGGCC----------ACCCGGgAGuc -5'
30580 3' -56.8 NC_006549.1 + 49876 0.7 0.650026
Target:  5'- aCGGAccCUuggGGCCCGG-GGGCCCagGGg -3'
miRNA:   3'- -GCUUaaGA---UCGGGCCaCCCGGGagUC- -5'
30580 3' -56.8 NC_006549.1 + 81054 0.72 0.528447
Target:  5'- cCGAGaaaaUCguuGCCCGGUGGGCCgUCc- -3'
miRNA:   3'- -GCUUa---AGau-CGGGCCACCCGGgAGuc -5'
30580 3' -56.8 NC_006549.1 + 7541 1.1 0.001889
Target:  5'- aCGAAUUCUAGCCCGGUGGGCCCUCAGg -3'
miRNA:   3'- -GCUUAAGAUCGGGCCACCCGGGAGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.