miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30580 5' -57.4 NC_006549.1 + 7853 0.66 0.854713
Target:  5'- gGACCGGacGGuCCCGUAGGu-UCGAGGGg -3'
miRNA:   3'- -CUGGUU--CCuGGGUAUCCccGGUUCCC- -5'
30580 5' -57.4 NC_006549.1 + 16260 0.66 0.846839
Target:  5'- gGGCUAGGaGGCgUCGgAGGGGUgGGGGGa -3'
miRNA:   3'- -CUGGUUC-CUG-GGUaUCCCCGgUUCCC- -5'
30580 5' -57.4 NC_006549.1 + 50578 0.66 0.830516
Target:  5'- aACCcuGAGGACCCGUu-GGGCCAAc-- -3'
miRNA:   3'- cUGG--UUCCUGGGUAucCCCGGUUccc -5'
30580 5' -57.4 NC_006549.1 + 102389 0.66 0.822082
Target:  5'- uGGCCcuuguGGACCCAU-GGGGCCc---- -3'
miRNA:   3'- -CUGGuu---CCUGGGUAuCCCCGGuuccc -5'
30580 5' -57.4 NC_006549.1 + 102555 0.66 0.813476
Target:  5'- aGCCcuuuGGGCCCGc-GGGGCCGGcGGa -3'
miRNA:   3'- cUGGuu--CCUGGGUauCCCCGGUUcCC- -5'
30580 5' -57.4 NC_006549.1 + 50489 0.67 0.804706
Target:  5'- gGGCCAucuGGcCCCGc-GGGGCCAAcgaggccaauGGGa -3'
miRNA:   3'- -CUGGUu--CCuGGGUauCCCCGGUU----------CCC- -5'
30580 5' -57.4 NC_006549.1 + 49935 0.67 0.804706
Target:  5'- aGGCUggGGGCCCGcgucgccuuuGucGCCGAGGGg -3'
miRNA:   3'- -CUGGuuCCUGGGUau--------CccCGGUUCCC- -5'
30580 5' -57.4 NC_006549.1 + 49726 0.67 0.78671
Target:  5'- -cCCGcGGGCCCGU-GGGGCCcguuggcccgcGAGGu -3'
miRNA:   3'- cuGGUuCCUGGGUAuCCCCGG-----------UUCCc -5'
30580 5' -57.4 NC_006549.1 + 6965 0.67 0.76816
Target:  5'- gGGCCucAGGGCCCAgAGGGuCCugcGGGu -3'
miRNA:   3'- -CUGGu-UCCUGGGUaUCCCcGGuu-CCC- -5'
30580 5' -57.4 NC_006549.1 + 100216 0.67 0.76816
Target:  5'- uGGCUggGGACCuCGggcuucgggggAGGGGUgGAGGa -3'
miRNA:   3'- -CUGGuuCCUGG-GUa----------UCCCCGgUUCCc -5'
30580 5' -57.4 NC_006549.1 + 59277 0.68 0.739455
Target:  5'- uACCAgAGGGCUCcUGGGuGGCguGGGGc -3'
miRNA:   3'- cUGGU-UCCUGGGuAUCC-CCGguUCCC- -5'
30580 5' -57.4 NC_006549.1 + 41144 0.68 0.729689
Target:  5'- -cCCAcGGGACCU--AGGGGcCCGAGaGGa -3'
miRNA:   3'- cuGGU-UCCUGGGuaUCCCC-GGUUC-CC- -5'
30580 5' -57.4 NC_006549.1 + 50859 0.68 0.699922
Target:  5'- -cCCAAcGGACCCA-GGuGGGCCcuuGGGu -3'
miRNA:   3'- cuGGUU-CCUGGGUaUC-CCCGGuu-CCC- -5'
30580 5' -57.4 NC_006549.1 + 7109 0.7 0.639095
Target:  5'- gGGCCcauGGGCCCAgucGGGcuCCAGGGGu -3'
miRNA:   3'- -CUGGuu-CCUGGGUau-CCCc-GGUUCCC- -5'
30580 5' -57.4 NC_006549.1 + 119635 0.7 0.608494
Target:  5'- uGCCGcuGGGAgCU--GGGGGCgGAGGGg -3'
miRNA:   3'- cUGGU--UCCUgGGuaUCCCCGgUUCCC- -5'
30580 5' -57.4 NC_006549.1 + 14319 0.71 0.557934
Target:  5'- --gUAAGGAuaCCCGUAGGGGUgGAGGcGg -3'
miRNA:   3'- cugGUUCCU--GGGUAUCCCCGgUUCC-C- -5'
30580 5' -57.4 NC_006549.1 + 41845 0.71 0.557934
Target:  5'- gGGCCcgcGAGGACCCccgGGGGcGCCGggcccgagAGGGc -3'
miRNA:   3'- -CUGG---UUCCUGGGua-UCCC-CGGU--------UCCC- -5'
30580 5' -57.4 NC_006549.1 + 7171 0.71 0.54795
Target:  5'- -cCCGAGGACCUcccGGGcCCAAGGGc -3'
miRNA:   3'- cuGGUUCCUGGGuauCCCcGGUUCCC- -5'
30580 5' -57.4 NC_006549.1 + 51016 0.72 0.51836
Target:  5'- aGCCuuGAGGGCCCc--GGGGCCccuuAGGGc -3'
miRNA:   3'- cUGG--UUCCUGGGuauCCCCGGu---UCCC- -5'
30580 5' -57.4 NC_006549.1 + 82552 0.72 0.51836
Target:  5'- aGCCuuuAGGACCCAU-GGGGCCcguuGGc -3'
miRNA:   3'- cUGGu--UCCUGGGUAuCCCCGGuu--CCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.