miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30581 3' -57.6 NC_006549.1 + 49725 0.66 0.864488
Target:  5'- cCGCGgGC-CCGUgGggcccguuggcccgcGAGGUCCCGCUu -3'
miRNA:   3'- aGCGCgUGcGGCAgU---------------CUCUAGGGUGG- -5'
30581 3' -57.6 NC_006549.1 + 41829 0.66 0.853896
Target:  5'- cCGgGgGCGCCGggcccgAGAGggCCCGCg -3'
miRNA:   3'- aGCgCgUGCGGCag----UCUCuaGGGUGg -5'
30581 3' -57.6 NC_006549.1 + 73168 0.66 0.853896
Target:  5'- aUUGgGCAauCGCCGUucCAGcAGGUCCUGCg -3'
miRNA:   3'- -AGCgCGU--GCGGCA--GUC-UCUAGGGUGg -5'
30581 3' -57.6 NC_006549.1 + 6110 0.66 0.853896
Target:  5'- aCGgGCACGCCGUC-----UUCCAUCu -3'
miRNA:   3'- aGCgCGUGCGGCAGucucuAGGGUGG- -5'
30581 3' -57.6 NC_006549.1 + 116461 0.67 0.82159
Target:  5'- -gGCGCuuGCCcaugGUCgccGGAGAUUCUGCCg -3'
miRNA:   3'- agCGCGugCGG----CAG---UCUCUAGGGUGG- -5'
30581 3' -57.6 NC_006549.1 + 49924 0.67 0.795581
Target:  5'- cCGCGU-CGCCuuuGUCgccgAGGGGUCCCAUg -3'
miRNA:   3'- aGCGCGuGCGG---CAG----UCUCUAGGGUGg -5'
30581 3' -57.6 NC_006549.1 + 54889 0.68 0.768284
Target:  5'- aCGCGgG-GCaCGUCAGGGAcUCUCAUCa -3'
miRNA:   3'- aGCGCgUgCG-GCAGUCUCU-AGGGUGG- -5'
30581 3' -57.6 NC_006549.1 + 22612 0.68 0.758938
Target:  5'- uUCGCGUACGCaauGcUAGAGccccgcAUUCCGCCg -3'
miRNA:   3'- -AGCGCGUGCGg--CaGUCUC------UAGGGUGG- -5'
30581 3' -57.6 NC_006549.1 + 59754 0.68 0.758938
Target:  5'- cCGUGUAUGCUGUCGGGGA-CgUACa -3'
miRNA:   3'- aGCGCGUGCGGCAGUCUCUaGgGUGg -5'
30581 3' -57.6 NC_006549.1 + 22856 0.68 0.758938
Target:  5'- cUCGCGCGCGCCGuauacguuUCAGAuGGguuUCCUuuACg -3'
miRNA:   3'- -AGCGCGUGCGGC--------AGUCU-CU---AGGG--UGg -5'
30581 3' -57.6 NC_006549.1 + 30804 0.69 0.71075
Target:  5'- gUCGUGCGCGCgCGaguGGGucaaCCCGCCg -3'
miRNA:   3'- -AGCGCGUGCG-GCaguCUCua--GGGUGG- -5'
30581 3' -57.6 NC_006549.1 + 84463 0.69 0.690959
Target:  5'- aCGCGCugGUC-UUAGAGAgaCCCuCCa -3'
miRNA:   3'- aGCGCGugCGGcAGUCUCUa-GGGuGG- -5'
30581 3' -57.6 NC_006549.1 + 113847 0.7 0.630712
Target:  5'- gUCGCGCACaCCGUCuu-GGUgCCCAgCg -3'
miRNA:   3'- -AGCGCGUGcGGCAGucuCUA-GGGUgG- -5'
30581 3' -57.6 NC_006549.1 + 21506 0.72 0.521376
Target:  5'- uUCGuCGgGCGCCG-CAGcGuuUCCCACCa -3'
miRNA:   3'- -AGC-GCgUGCGGCaGUCuCu-AGGGUGG- -5'
30581 3' -57.6 NC_006549.1 + 36982 0.78 0.228938
Target:  5'- gUUGCGcCGCGuUCGaUAGAGAUCCCACCa -3'
miRNA:   3'- -AGCGC-GUGC-GGCaGUCUCUAGGGUGG- -5'
30581 3' -57.6 NC_006549.1 + 9819 1.13 0.001173
Target:  5'- aUCGCGCACGCCGUCAGAGAUCCCACCg -3'
miRNA:   3'- -AGCGCGUGCGGCAGUCUCUAGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.