miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30581 5' -54.8 NC_006549.1 + 108133 0.66 0.924899
Target:  5'- cGGGAcGAAAUGCCuccuugGUGuaaAGCGCAgUGCGa -3'
miRNA:   3'- aCCCU-UUUUGCGG------CGC---UCGCGU-ACGC- -5'
30581 5' -54.8 NC_006549.1 + 46584 0.66 0.919277
Target:  5'- cUGGuaGAAAACccuCCGCGGGCGCA-GCa -3'
miRNA:   3'- -ACCc-UUUUUGc--GGCGCUCGCGUaCGc -5'
30581 5' -54.8 NC_006549.1 + 15239 0.66 0.919277
Target:  5'- gGGGGAGcuuAACGUagggaaauaGCGAGCGCAcGUc -3'
miRNA:   3'- aCCCUUU---UUGCGg--------CGCUCGCGUaCGc -5'
30581 5' -54.8 NC_006549.1 + 72525 0.66 0.913409
Target:  5'- aGGGcacacCGCCGCGcGCGCcacguuucccAUGCGc -3'
miRNA:   3'- aCCCuuuuuGCGGCGCuCGCG----------UACGC- -5'
30581 5' -54.8 NC_006549.1 + 5601 0.66 0.905414
Target:  5'- uUGGGAuuggcguACGCCGCGAgucucuccggggugGCGCucaucaccGCGa -3'
miRNA:   3'- -ACCCUuuu----UGCGGCGCU--------------CGCGua------CGC- -5'
30581 5' -54.8 NC_006549.1 + 137143 0.67 0.894343
Target:  5'- gGGGuGAAAUcuCCGCGGGCGauuccgAUGCGg -3'
miRNA:   3'- aCCCuUUUUGc-GGCGCUCGCg-----UACGC- -5'
30581 5' -54.8 NC_006549.1 + 10798 0.67 0.87315
Target:  5'- cUGcGGAGAAACGCaaaGCGGGCcUccGCGa -3'
miRNA:   3'- -AC-CCUUUUUGCGg--CGCUCGcGuaCGC- -5'
30581 5' -54.8 NC_006549.1 + 130390 0.68 0.849953
Target:  5'- aGGGGGAGACGaaaUGCu-GUGCGUGCc -3'
miRNA:   3'- aCCCUUUUUGCg--GCGcuCGCGUACGc -5'
30581 5' -54.8 NC_006549.1 + 51777 0.68 0.824058
Target:  5'- gGGGAAuaaccauaacuccAGACGCUGCaaaagGAGCGCucguguuUGCGc -3'
miRNA:   3'- aCCCUU-------------UUUGCGGCG-----CUCGCGu------ACGC- -5'
30581 5' -54.8 NC_006549.1 + 101916 0.69 0.813556
Target:  5'- cGGGGgcccugcaggcccuGGGACaCCGCGAGCGCcggauuUGCa -3'
miRNA:   3'- aCCCU--------------UUUUGcGGCGCUCGCGu-----ACGc -5'
30581 5' -54.8 NC_006549.1 + 70648 0.71 0.710929
Target:  5'- uUGGGGAAAACggcggaagagGCCGUG-GCGuUGUGCGg -3'
miRNA:   3'- -ACCCUUUUUG----------CGGCGCuCGC-GUACGC- -5'
30581 5' -54.8 NC_006549.1 + 87144 0.71 0.690513
Target:  5'- aGGcAAGAACaCCGCGAGUGCGUcGUGg -3'
miRNA:   3'- aCCcUUUUUGcGGCGCUCGCGUA-CGC- -5'
30581 5' -54.8 NC_006549.1 + 121313 0.72 0.659535
Target:  5'- cGGGAuguauagccgGAGuuuuaaauacuACGCCGCGAGCaGCGUgaGCGg -3'
miRNA:   3'- aCCCU----------UUU-----------UGCGGCGCUCG-CGUA--CGC- -5'
30581 5' -54.8 NC_006549.1 + 29270 0.73 0.566272
Target:  5'- cGGGAGu--CGCCGCGAGCGUu---- -3'
miRNA:   3'- aCCCUUuuuGCGGCGCUCGCGuacgc -5'
30581 5' -54.8 NC_006549.1 + 38814 0.75 0.49607
Target:  5'- uUGGGAAuuuguCGCCacgcuagggGCGAGCGC-UGCGa -3'
miRNA:   3'- -ACCCUUuuu--GCGG---------CGCUCGCGuACGC- -5'
30581 5' -54.8 NC_006549.1 + 68882 0.79 0.273393
Target:  5'- cGGGAG--GCGCucuCGCGuGCGCGUGCGa -3'
miRNA:   3'- aCCCUUuuUGCG---GCGCuCGCGUACGC- -5'
30581 5' -54.8 NC_006549.1 + 9778 1.1 0.003001
Target:  5'- gUGGGAAAAACGCCGCGAGCGCAUGCGa -3'
miRNA:   3'- -ACCCUUUUUGCGGCGCUCGCGUACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.