miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30583 3' -56.1 NC_006549.1 + 131683 0.66 0.924893
Target:  5'- gCGGGCgGAGUGAaaGCgCGcuCACCGc -3'
miRNA:   3'- -GCCCGgUUCACUgcUG-GCuuGUGGCc -5'
30583 3' -56.1 NC_006549.1 + 21245 0.66 0.919442
Target:  5'- uCGGGCgGcauGGgcagGGCGGCCGAGguguuguCCGGa -3'
miRNA:   3'- -GCCCGgU---UCa---CUGCUGGCUUgu-----GGCC- -5'
30583 3' -56.1 NC_006549.1 + 50509 0.66 0.919442
Target:  5'- uGGGuCCAGGUGGaccaGCCGGGCcauCUGGc -3'
miRNA:   3'- gCCC-GGUUCACUgc--UGGCUUGu--GGCC- -5'
30583 3' -56.1 NC_006549.1 + 6628 0.66 0.91376
Target:  5'- cCGGGCCGAcugGAauACCGGGuccCACUGGg -3'
miRNA:   3'- -GCCCGGUUca-CUgcUGGCUU---GUGGCC- -5'
30583 3' -56.1 NC_006549.1 + 7722 0.66 0.91376
Target:  5'- gGGGCCcAG-GGgGGCCGAugGgCCGc -3'
miRNA:   3'- gCCCGGuUCaCUgCUGGCUugU-GGCc -5'
30583 3' -56.1 NC_006549.1 + 98159 0.66 0.91376
Target:  5'- uGGGCaGAGUGACGcACCc--CGCCaGGa -3'
miRNA:   3'- gCCCGgUUCACUGC-UGGcuuGUGG-CC- -5'
30583 3' -56.1 NC_006549.1 + 74438 0.67 0.888746
Target:  5'- aCGGGCaacaGAGaGGCGGCCguaaGAGCAgUGGu -3'
miRNA:   3'- -GCCCGg---UUCaCUGCUGG----CUUGUgGCC- -5'
30583 3' -56.1 NC_006549.1 + 101967 0.67 0.867669
Target:  5'- uGGGCCAGGaGACc-CCGuuGCGCCaGGg -3'
miRNA:   3'- gCCCGGUUCaCUGcuGGCu-UGUGG-CC- -5'
30583 3' -56.1 NC_006549.1 + 102446 0.68 0.85258
Target:  5'- uGGGCCGGGggguccagGAgGGCCGGgguucACGCCu- -3'
miRNA:   3'- gCCCGGUUCa-------CUgCUGGCU-----UGUGGcc -5'
30583 3' -56.1 NC_006549.1 + 41634 0.68 0.828508
Target:  5'- gGGGuCCAGG-GACcACCGGGaccacagggacCACCGGg -3'
miRNA:   3'- gCCC-GGUUCaCUGcUGGCUU-----------GUGGCC- -5'
30583 3' -56.1 NC_006549.1 + 74840 0.68 0.828508
Target:  5'- aGGcCCGGGUGGCuaaucacuGCCGGACgGCCGGa -3'
miRNA:   3'- gCCcGGUUCACUGc-------UGGCUUG-UGGCC- -5'
30583 3' -56.1 NC_006549.1 + 41847 0.7 0.708963
Target:  5'- gCGGGCCcgcGAG-GACccCCGGggGCGCCGGg -3'
miRNA:   3'- -GCCCGG---UUCaCUGcuGGCU--UGUGGCC- -5'
30583 3' -56.1 NC_006549.1 + 7487 0.71 0.699078
Target:  5'- gGGGCCAagGGUGcCGAUgGAccUACCGGa -3'
miRNA:   3'- gCCCGGU--UCACuGCUGgCUu-GUGGCC- -5'
30583 3' -56.1 NC_006549.1 + 125748 0.71 0.699078
Target:  5'- uGcGGCCAGGgauccgaGACGACCGuacacgguucCGCCGGa -3'
miRNA:   3'- gC-CCGGUUCa------CUGCUGGCuu--------GUGGCC- -5'
30583 3' -56.1 NC_006549.1 + 51334 0.75 0.444836
Target:  5'- uGGGCCGuccacGUGugGACCGAaagaauuacuGC-CCGGg -3'
miRNA:   3'- gCCCGGUu----CACugCUGGCU----------UGuGGCC- -5'
30583 3' -56.1 NC_006549.1 + 12858 1.09 0.003031
Target:  5'- uCGGGCCAAGUGACGACCGAACACCGGc -3'
miRNA:   3'- -GCCCGGUUCACUGCUGGCUUGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.