Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30585 | 3' | -50.3 | NC_006549.1 | + | 120566 | 0.66 | 0.995753 |
|
Target: 5'- uAGggUAGGCG-Cga--GUGucggACCGCg -3' miRNA: 3'- -UCuuAUCCGCaGagagCACua--UGGCG- -5' |
|||||||
| 30585 | 3' | -50.3 | NC_006549.1 | + | 3393 | 0.68 | 0.983244 |
|
Target: 5'- cAGAAUGuGGUGUaaagaguaacCUCUUGUGAauUACgCGCa -3' miRNA: 3'- -UCUUAU-CCGCA----------GAGAGCACU--AUG-GCG- -5' |
|||||||
| 30585 | 3' | -50.3 | NC_006549.1 | + | 119473 | 0.7 | 0.94009 |
|
Target: 5'- cGuGUGGGCGUCUCUUGggagucaucagcacgGcguUACCGCu -3' miRNA: 3'- uCuUAUCCGCAGAGAGCa--------------Cu--AUGGCG- -5' |
|||||||
| 30585 | 3' | -50.3 | NC_006549.1 | + | 9211 | 0.77 | 0.67099 |
|
Target: 5'- uGGucguGGUGUCUgUCGUGAUcGCCGCa -3' miRNA: 3'- -UCuuauCCGCAGAgAGCACUA-UGGCG- -5' |
|||||||
| 30585 | 3' | -50.3 | NC_006549.1 | + | 29487 | 1.13 | 0.005241 |
|
Target: 5'- uAGAAUAGGCGUCUCUCGUGAUACCGCg -3' miRNA: 3'- -UCUUAUCCGCAGAGAGCACUAUGGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home