miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30585 5' -55.6 NC_006549.1 + 64238 0.66 0.915076
Target:  5'- uGGaCGGUAccguGAUgcCGGAGAcGCCCGa- -3'
miRNA:   3'- cCC-GCCAU----CUAauGCCUCU-CGGGCag -5'
30585 5' -55.6 NC_006549.1 + 64014 0.66 0.896496
Target:  5'- aGGGCcGUGGcgUACGcGGuGCCCG-Cg -3'
miRNA:   3'- -CCCGcCAUCuaAUGCcUCuCGGGCaG- -5'
30585 5' -55.6 NC_006549.1 + 11007 0.67 0.875836
Target:  5'- cGGCGaGgacaccucGGAgcucaUACGGAGAGCCCuagaGUCa -3'
miRNA:   3'- cCCGC-Ca-------UCUa----AUGCCUCUCGGG----CAG- -5'
30585 5' -55.6 NC_006549.1 + 128527 0.67 0.860963
Target:  5'- -cGCGGUAcGUUACGacaaucucGGGCCCGUCu -3'
miRNA:   3'- ccCGCCAUcUAAUGCcu------CUCGGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 100256 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 100194 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 100131 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 100068 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 100005 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 99942 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 99879 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 99816 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 99753 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 99690 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 99627 0.67 0.853213
Target:  5'- gGGGaggGGUGGAggACucgGGAGAGguCCCGUUg -3'
miRNA:   3'- -CCCg--CCAUCUaaUG---CCUCUC--GGGCAG- -5'
30585 5' -55.6 NC_006549.1 + 53447 0.69 0.802737
Target:  5'- cGGGCGGccgaagAGAUUGCGGA-AGCCg--- -3'
miRNA:   3'- -CCCGCCa-----UCUAAUGCCUcUCGGgcag -5'
30585 5' -55.6 NC_006549.1 + 40660 0.69 0.756346
Target:  5'- uGGGCGGcAGA----GGAGGGCCCa-- -3'
miRNA:   3'- -CCCGCCaUCUaaugCCUCUCGGGcag -5'
30585 5' -55.6 NC_006549.1 + 95585 0.7 0.707205
Target:  5'- aGGGUGGUG----GCGGGGcuGCCCGUg -3'
miRNA:   3'- -CCCGCCAUcuaaUGCCUCu-CGGGCAg -5'
30585 5' -55.6 NC_006549.1 + 29450 1.12 0.001905
Target:  5'- gGGGCGGUAGAUUACGGAGAGCCCGUCg -3'
miRNA:   3'- -CCCGCCAUCUAAUGCCUCUCGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.