miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30587 3' -54.1 NC_006549.1 + 71117 0.67 0.933184
Target:  5'- gCCCGUCaaGGAGGCGgAUCUuaccaaauaccugacGCCCGcCa -3'
miRNA:   3'- aGGGUAG--UCUCCGC-UAGA---------------UGGGUaGc -5'
30587 3' -54.1 NC_006549.1 + 13894 0.67 0.930599
Target:  5'- aCCUA-UAGAaaugucgGGCGAUCUcCCCGUCa -3'
miRNA:   3'- aGGGUaGUCU-------CCGCUAGAuGGGUAGc -5'
30587 3' -54.1 NC_006549.1 + 60575 0.67 0.920212
Target:  5'- aUCUCGUCGGuGagguuguacGCGAUCUcUCCGUCGa -3'
miRNA:   3'- -AGGGUAGUCuC---------CGCUAGAuGGGUAGC- -5'
30587 3' -54.1 NC_006549.1 + 50442 0.68 0.902008
Target:  5'- cCCCGcCGGAccGGCGGg--GCCCAUUGg -3'
miRNA:   3'- aGGGUaGUCU--CCGCUagaUGGGUAGC- -5'
30587 3' -54.1 NC_006549.1 + 34056 1.09 0.003904
Target:  5'- aUCCCAUCAGAGGCGAUCUACCCAUCGu -3'
miRNA:   3'- -AGGGUAGUCUCCGCUAGAUGGGUAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.