miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30589 3' -59.4 NC_006549.1 + 122768 0.66 0.774314
Target:  5'- cCCGCCucu-UCGGCCuuCugGCCAGCc- -3'
miRNA:   3'- -GGCGGuguuGGCCGG--GugCGGUUGca -5'
30589 3' -59.4 NC_006549.1 + 122999 0.66 0.774314
Target:  5'- cCCGCCucu-UCGGCCuuCugGCCAGCc- -3'
miRNA:   3'- -GGCGGuguuGGCCGG--GugCGGUUGca -5'
30589 3' -59.4 NC_006549.1 + 92165 0.66 0.774314
Target:  5'- gCGCCGCuuACCGucgauuCCgACGCCAuaGCGUg -3'
miRNA:   3'- gGCGGUGu-UGGCc-----GGgUGCGGU--UGCA- -5'
30589 3' -59.4 NC_006549.1 + 122684 0.66 0.774314
Target:  5'- cCCGCCucu-UCGGCCuuCugGCCAGCc- -3'
miRNA:   3'- -GGCGGuguuGGCCGG--GugCGGUUGca -5'
30589 3' -59.4 NC_006549.1 + 102573 0.66 0.755853
Target:  5'- -gGCCccuggguccagcGCAGCCcuuugGGCCCGCgggGCCGGCGg -3'
miRNA:   3'- ggCGG------------UGUUGG-----CCGGGUG---CGGUUGCa -5'
30589 3' -59.4 NC_006549.1 + 52935 0.66 0.752109
Target:  5'- gCCGCCcucGCGGCCGacgaagacgaGCCCGCGCaagaagguuugcaGGCGg -3'
miRNA:   3'- -GGCGG---UGUUGGC----------CGGGUGCGg------------UUGCa -5'
30589 3' -59.4 NC_006549.1 + 113736 0.67 0.736977
Target:  5'- cCCGCCGCGuuuuugCGGCUUAUGCCGucccucucucuGCGg -3'
miRNA:   3'- -GGCGGUGUug----GCCGGGUGCGGU-----------UGCa -5'
30589 3' -59.4 NC_006549.1 + 7061 0.67 0.727405
Target:  5'- cCCGCCGgGcccGCCGGaCCC-CGCgGACc- -3'
miRNA:   3'- -GGCGGUgU---UGGCC-GGGuGCGgUUGca -5'
30589 3' -59.4 NC_006549.1 + 48120 0.67 0.708034
Target:  5'- -aGCUGgGGCCGGCCCacaaGCGaCCGGCa- -3'
miRNA:   3'- ggCGGUgUUGGCCGGG----UGC-GGUUGca -5'
30589 3' -59.4 NC_006549.1 + 26832 0.69 0.618784
Target:  5'- aCGCCAgAAaCGGCgUACGCC-GCGUa -3'
miRNA:   3'- gGCGGUgUUgGCCGgGUGCGGuUGCA- -5'
30589 3' -59.4 NC_006549.1 + 21641 0.7 0.559352
Target:  5'- gCCGuCCAUgguuACCGGCCCuccCGUgAACGUc -3'
miRNA:   3'- -GGC-GGUGu---UGGCCGGGu--GCGgUUGCA- -5'
30589 3' -59.4 NC_006549.1 + 17189 0.7 0.54958
Target:  5'- aUGUCGCAACUGGCgCACGaaAACGg -3'
miRNA:   3'- gGCGGUGUUGGCCGgGUGCggUUGCa -5'
30589 3' -59.4 NC_006549.1 + 35315 0.7 0.54958
Target:  5'- cCCGCuCACGGCCGGCUCgggaACGUgCGACa- -3'
miRNA:   3'- -GGCG-GUGUUGGCCGGG----UGCG-GUUGca -5'
30589 3' -59.4 NC_006549.1 + 37895 0.7 0.539861
Target:  5'- aCCGCCAacGCCaucGCCUcCGCCAACGc -3'
miRNA:   3'- -GGCGGUguUGGc--CGGGuGCGGUUGCa -5'
30589 3' -59.4 NC_006549.1 + 83505 0.7 0.520604
Target:  5'- gCGCCGgAACCGGaCCUgACGgCCGugGUg -3'
miRNA:   3'- gGCGGUgUUGGCC-GGG-UGC-GGUugCA- -5'
30589 3' -59.4 NC_006549.1 + 97646 0.72 0.411934
Target:  5'- aCGCCuCGACCGGCCCgGCGgCAgaagcaACGUc -3'
miRNA:   3'- gGCGGuGUUGGCCGGG-UGCgGU------UGCA- -5'
30589 3' -59.4 NC_006549.1 + 37775 1.09 0.001472
Target:  5'- uCCGCCACAACCGGCCCACGCCAACGUg -3'
miRNA:   3'- -GGCGGUGUUGGCCGGGUGCGGUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.