Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30590 | 3' | -60 | NC_006549.1 | + | 123151 | 0.71 | 0.377773 |
Target: 5'- -uCUGGUCCGCCucuguuGCCUUCGAGGAa -3' miRNA: 3'- uuGGCCAGGUGGuc----CGGGAGUUCCUg -5' |
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30590 | 3' | -60 | NC_006549.1 | + | 7386 | 0.72 | 0.331037 |
Target: 5'- gGGCCccagGGcCCGCCcGGCCCUCcAGGGCc -3' miRNA: 3'- -UUGG----CCaGGUGGuCCGGGAGuUCCUG- -5' |
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30590 | 3' | -60 | NC_006549.1 | + | 7068 | 0.73 | 0.302322 |
Target: 5'- cACCGGacCCGCCGGGCCCgcc-GGACc -3' miRNA: 3'- uUGGCCa-GGUGGUCCGGGaguuCCUG- -5' |
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30590 | 3' | -60 | NC_006549.1 | + | 101918 | 0.73 | 0.288699 |
Target: 5'- -cCCGGgggcCCugCAGGCCCU--GGGACa -3' miRNA: 3'- uuGGCCa---GGugGUCCGGGAguUCCUG- -5' |
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30590 | 3' | -60 | NC_006549.1 | + | 122920 | 0.77 | 0.161065 |
Target: 5'- -uCUGGUCCGCCucuucGGCCUUCGAGGAa -3' miRNA: 3'- uuGGCCAGGUGGu----CCGGGAGUUCCUg -5' |
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30590 | 3' | -60 | NC_006549.1 | + | 123318 | 0.77 | 0.161065 |
Target: 5'- -uCUGGUCCGCCucuucGGCCUUCGAGGAa -3' miRNA: 3'- uuGGCCAGGUGGu----CCGGGAGUUCCUg -5' |
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30590 | 3' | -60 | NC_006549.1 | + | 41292 | 1.06 | 0.001439 |
Target: 5'- aAACCGGUCCACCAGGCCCUCAAGGACu -3' miRNA: 3'- -UUGGCCAGGUGGUCCGGGAGUUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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