miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30592 3' -45.6 NC_006549.1 + 138997 0.66 0.999976
Target:  5'- aGGuUGCAGAAGCAACcaaaAACAUUgAUg -3'
miRNA:   3'- -UC-AUGUCUUCGUUGuug-UUGUGAgUG- -5'
30592 3' -45.6 NC_006549.1 + 126982 0.66 0.999976
Target:  5'- --cGCAGAGGCGA--GCAugAC-CGCa -3'
miRNA:   3'- ucaUGUCUUCGUUguUGUugUGaGUG- -5'
30592 3' -45.6 NC_006549.1 + 35114 0.66 0.999966
Target:  5'- gGGUAUGGu-GCAcuACGACAucaaaGCUCACa -3'
miRNA:   3'- -UCAUGUCuuCGU--UGUUGUug---UGAGUG- -5'
30592 3' -45.6 NC_006549.1 + 96441 0.66 0.999938
Target:  5'- --aACAGAcGCAGCAAacucuaGACACuuuUCACa -3'
miRNA:   3'- ucaUGUCUuCGUUGUUg-----UUGUG---AGUG- -5'
30592 3' -45.6 NC_006549.1 + 78639 0.66 0.999938
Target:  5'- cGUACAGGauGGCcccGGCGACGGguCUCAg -3'
miRNA:   3'- uCAUGUCU--UCG---UUGUUGUUguGAGUg -5'
30592 3' -45.6 NC_006549.1 + 26732 0.67 0.99989
Target:  5'- cGUGCAcGGcuacAGUAaaGCAACAACAC-CGCa -3'
miRNA:   3'- uCAUGU-CU----UCGU--UGUUGUUGUGaGUG- -5'
30592 3' -45.6 NC_006549.1 + 115943 0.67 0.999737
Target:  5'- gGGcGCAG-AGCAcgGCAACAACGCagugccagacguuuUCACu -3'
miRNA:   3'- -UCaUGUCuUCGU--UGUUGUUGUG--------------AGUG- -5'
30592 3' -45.6 NC_006549.1 + 27603 0.68 0.999601
Target:  5'- uGUACGu-AGCu---GCAACACUCGCg -3'
miRNA:   3'- uCAUGUcuUCGuuguUGUUGUGAGUG- -5'
30592 3' -45.6 NC_006549.1 + 35758 0.68 0.99954
Target:  5'- aAGUACGGAcgcuucuucggacgaAGauuACGACGACAC-CGCg -3'
miRNA:   3'- -UCAUGUCU---------------UCgu-UGUUGUUGUGaGUG- -5'
30592 3' -45.6 NC_006549.1 + 139269 0.68 0.999366
Target:  5'- cGUGCGGAAcCGAaauuCAAUGCUCACa -3'
miRNA:   3'- uCAUGUCUUcGUUguu-GUUGUGAGUG- -5'
30592 3' -45.6 NC_006549.1 + 75658 0.69 0.997826
Target:  5'- uGGUGCAGAGaCAACAaccaaaaauGCAGCGC-CAUa -3'
miRNA:   3'- -UCAUGUCUUcGUUGU---------UGUUGUGaGUG- -5'
30592 3' -45.6 NC_006549.1 + 135601 0.71 0.993932
Target:  5'- --cGCAGuuaaaugucucGAGCAACAACAGCA-UCGCg -3'
miRNA:   3'- ucaUGUC-----------UUCGUUGUUGUUGUgAGUG- -5'
30592 3' -45.6 NC_006549.1 + 4420 0.71 0.992925
Target:  5'- ----aGGAGGCGuguuACAACcGCGCUCACa -3'
miRNA:   3'- ucaugUCUUCGU----UGUUGuUGUGAGUG- -5'
30592 3' -45.6 NC_006549.1 + 122550 0.71 0.992925
Target:  5'- --cGCAGcAGCGGCGACAGCcuuCUCAg -3'
miRNA:   3'- ucaUGUCuUCGUUGUUGUUGu--GAGUg -5'
30592 3' -45.6 NC_006549.1 + 126474 0.71 0.991789
Target:  5'- --gACGGuuGCAACGACAugacguGCGCUUACu -3'
miRNA:   3'- ucaUGUCuuCGUUGUUGU------UGUGAGUG- -5'
30592 3' -45.6 NC_006549.1 + 62245 0.72 0.987499
Target:  5'- gAGUACAGAAuGCug-GAgGACAUUCACg -3'
miRNA:   3'- -UCAUGUCUU-CGuugUUgUUGUGAGUG- -5'
30592 3' -45.6 NC_006549.1 + 45567 1.12 0.015315
Target:  5'- cAGUACAGAAGCAACAACAACACUCACg -3'
miRNA:   3'- -UCAUGUCUUCGUUGUUGUUGUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.